Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P23
         (1340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.84 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +1

Query: 838 PPXXPXPPXPXXXFF--FXPPPPPP 906
           PP  P PP P   F     PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 592 PGGXPPXPPXXGGGXXVGXPXXPPP 666
           P G PP PP   G      P  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 592 PGGXPPXPPXXGGGXXVGXPXXPPP 666
           PG  PP PP  G       P  PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect(2) = 1.1
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +1

Query: 1192 PPPPPPXPXXXXXXXXXXXXXXXXXXXRPXXPPXPP 1299
            PPPPPP P                   R   P  PP
Sbjct: 190  PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPP 225



 Score = 23.4 bits (48), Expect(2) = 1.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1186 PXPPPPPP 1209
            P PPPPPP
Sbjct: 189  PPPPPPPP 196


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 598 GXPPXPPXXGGGXXVGXPXXPPPKKXV 678
           G PP PP   G    G P  PPP   V
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAV 785



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 596 GGXPPXPPXGGGGXXXGXPKXPPQKNXCGGXK 691
           G  PP PP G  G     P  PP     GG +
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 838 PPXXPXPPXPXXXFFFXPPPPPP 906
           PP  P PP P       PPPPPP
Sbjct: 761 PP--PPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 838 PPXXPXPPXPXXXFFFXPPPPPP 906
           P   P P  P       PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 817 PPFFFFXPPXXPXPPXPXXXFFFXPPPPPP 906
           PP      P  P PP         PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 1011 KGRXGXGWGXXXXRAXXPPXXPGGGGG 931
            +G  G G+G     +  PP  PGG GG
Sbjct: 183  RGHNGGGFGGFGGGSGGPPPGPGGFGG 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,703
Number of Sequences: 5004
Number of extensions: 26809
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 737243038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)