Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P18
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.13 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   2.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 415 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 299
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 457 RSGRHTLDFTXLVLSLLRGDTVDCESALNIID*TKQFISL 338
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 512 PLIKVNDSIQLDIATTKIMDFIKFESGNLCMIPRRP*LG 628
           PLI+V + I L+ A        ++  GN  +IP  P +G
Sbjct: 396 PLIRVENIIDLEGAPQNFYYIEEYLPGNGVIIPDDPPIG 434


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 209 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 310
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 219 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 118
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,050
Number of Sequences: 438
Number of extensions: 5072
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)