Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P17
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710...    33   0.33 
04_04_0265 + 24040689-24041051,24041210-24041457,24041845-240423...    30   2.3  
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374...    29   5.4  
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335           29   5.4  
02_02_0403 - 9866122-9867231                                           29   5.4  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   7.1  
03_01_0381 - 2960533-2960805                                           29   7.1  
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178           28   9.4  
02_01_0384 - 2781362-2782299,2782320-2782428                           28   9.4  

>10_07_0039 -
           12269928-12270103,12270871-12271015,12271066-12271094,
           12271394-12271478
          Length = 144

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 195 DPGARVVPGAAREPRHRPAHSHTL 266
           D G R VPG +  PRHRP H  T+
Sbjct: 81  DGGRRAVPGQSTVPRHRPRHDPTI 104


>04_04_0265 +
           24040689-24041051,24041210-24041457,24041845-24042365,
           24042433-24042968
          Length = 555

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 152 AISVRSELRASASTTAEWRRAMSRSGACQHVSTQAIKILRNSL 24
           A+S+R+ELR     +A+W + M R     H +   + ++ + +
Sbjct: 185 AMSLRNELRGPRQNSADWYKYMQRGAEAVHAANPRVVVILSGM 227


>11_06_0188 +
           21036465-21036627,21036735-21036883,21037369-21037484,
           21037939-21038101
          Length = 196

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 602 GXPRGXGXPPRGGXXG 555
           G PRG G PPRGG  G
Sbjct: 174 GAPRGRGGPPRGGGRG 189


>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
          Length = 377

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 225 PRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESERE 115
           P+ VR V R +TVP+ +TD  A G    EK  E E E
Sbjct: 120 PKFVR-VLRPKTVPIRYTDTFASGTVALEKELEKEFE 155


>02_02_0403 - 9866122-9867231
          Length = 369

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 81  PRHGPPPLGSCTRARSQLASHRNSSRLRRRQ*KAMGR-FDPGARVVPGAAREPRHRPAHS 257
           P+H   PL    R+ S      +  R RRRQ +AM R F  G  +V G     R   A +
Sbjct: 297 PQHPVVPLSDDDRSDSPELPPESVPRRRRRQWRAMPRDFSHGRALVHGGHNNQRRGGAGA 356

Query: 258 -HTLLQDGRWLR 290
            H+     RW R
Sbjct: 357 VHSPSSRYRWSR 368


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/57 (28%), Positives = 17/57 (29%)
 Frame = +1

Query: 715  PXKPPXXXSPXPXXXXPPXXXSVXKXIXPXRXXXSXNPXXAPXKXXXPPXPXPXXXP 885
            P +PP   SP P    PP   S      P        P   P     P  P P   P
Sbjct: 1155 PCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPP 1211


>03_01_0381 - 2960533-2960805
          Length = 90

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 216 VRHVHRDQTVPLLFTDDVAIGCYFCEKRAESERE 115
           +R   R +TVP+ +TD  A G    EK  E E E
Sbjct: 1   MRRSQRPKTVPIRYTDTFASGTIALEKELEKEFE 34


>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
          Length = 1143

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 93  PPPLGSCTRARSQLASHRNSS 155
           PP LGSC+R R   A H N S
Sbjct: 221 PPELGSCSRLRVLKAGHNNLS 241


>02_01_0384 - 2781362-2782299,2782320-2782428
          Length = 348

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 81  PRHGPPPLGSCTRARSQLASHRNSSRLRRRQ*KAMGRFDPGARVVPGAAREPRHRPAHSH 260
           P     PLG CT A   LA+   +S+   +   A G    G+  +P  A  PR  P  + 
Sbjct: 143 PSSTSAPLGPCTLAHEGLAAVLATSKAASKSEAASG----GSSAIPPPATAPRFPPPRAM 198

Query: 261 T 263
           T
Sbjct: 199 T 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,521,718
Number of Sequences: 37544
Number of extensions: 305151
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)