Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P15
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425...    30   2.8  
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006...    29   3.7  
11_06_0238 - 21614535-21615347,21616759-21617352                       29   4.9  

>03_01_0575 +
           4247431-4247489,4248475-4248547,4248792-4249229,
           4252122-4253339
          Length = 595

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 431 MMPKTVPIXLIDFVCYKDGDRIALFIAE 514
           +M +  P+ LIDF CYK  D + +  AE
Sbjct: 168 IMSRPRPVYLIDFACYKPADELKVSKAE 195


>03_06_0476 +
           34199577-34199638,34200267-34200397,34200535-34200698,
           34201007-34201117,34201308-34201387,34201489-34201639,
           34201736-34201829,34202421-34202509,34203672-34203745,
           34203859-34204021,34204445-34204530,34205011-34205094,
           34205186-34205366,34205837-34205887
          Length = 506

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
 Frame = +1

Query: 148 FSQITAVVTSQCTKNNA---ED---KVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 309
           FSQ T V+ +Q  + +    +D   K   V  A R++G  L GLV ++V +  + E+KP+
Sbjct: 109 FSQFTVVIATQLPERSLLKLDDICRKANIVLVAARSYG--LTGLVRISVKEHNVIESKPD 166

Query: 310 GALDEV 327
             LD++
Sbjct: 167 HFLDDL 172


>11_06_0238 - 21614535-21615347,21616759-21617352
          Length = 468

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 395 VLV*ATNMRTTSMMPKTVPIXLIDFVCYKDG 487
           +L  A  + T  +M +  P+ L+DF CYK G
Sbjct: 54  LLAAAVVLATAYLMRRPRPVYLLDFACYKPG 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,633,722
Number of Sequences: 37544
Number of extensions: 440091
Number of successful extensions: 1244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)