Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P15
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    27   0.17 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.40 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.40 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 562 HVWRFSVFCWKHSGAAF 512
           +VWRF   C+K+ G AF
Sbjct: 3   NVWRFPYLCYKNGGGAF 19


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 562 HVWRFSVFCWKHSGAAF 512
           ++WRF   C+K+ G AF
Sbjct: 41  NLWRFPYLCYKNGGGAF 57


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 562 HVWRFSVFCWKHSGAAF 512
           ++WRF   C+K+ G AF
Sbjct: 94  NLWRFPYLCYKNGGGAF 110


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 737 GXXLIXDSAMLAGVGVGTLLEGISRYREGHL 645
           G  L+       G G+G  L+GIS   E HL
Sbjct: 162 GAKLLLQMGFEPGKGLGKQLQGISTPVEAHL 192


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 549 SQSFAGSTQGPPSAMNKAIRSPSL 478
           S  F    QGPP+  N  I SPS+
Sbjct: 346 SFDFQSKDQGPPNDGNGNILSPSI 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,404
Number of Sequences: 438
Number of extensions: 4261
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)