Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P12
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.052
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    32   0.091
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.85 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   1.1  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   1.1  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.5  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   4.5  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   4.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   7.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.1 bits (72), Expect = 0.052
 Identities = 26/96 (27%), Positives = 46/96 (47%)
 Frame = +1

Query: 145 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTP 324
           +P + T    S++TI+SS+P+T+  +   +  T      +S    +    TT  T  ST 
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560

Query: 325 INFGSXAPRTSSGIVSQLSSDLSSPKTRLSLCTSAT 432
           + + S  P TSS      S+ ++S     + CT++T
Sbjct: 561 VPYTS-TPVTSSNYTISSSTPVTSTPVTTTNCTTST 595


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 32.3 bits (70), Expect = 0.091
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +3

Query: 168 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 335
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169

Query: 336 LQXSKD 353
            +  K+
Sbjct: 170 SKYIKE 175


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 37/130 (28%), Positives = 56/130 (43%)
 Frame = +1

Query: 151 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPIN 330
           +SLT+   +S ++ASSS  T+  L  +SI +    + S   S      TT  +  S+  N
Sbjct: 107 SSLTSSSATSSSLASSST-TSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTN 165

Query: 331 FGSXAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQ 510
             + A  TSS   S LSS  +S     S   S++++         AT + L +  A    
Sbjct: 166 STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNS---TTSATATSSSLSSTAASNSA 222

Query: 511 ARESAGS*SL 540
              S  S SL
Sbjct: 223 TSSSLASSSL 232



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 145 IPTSLTTFWRSSFTIASSSPITTVRLKRA-SIYTRRRRAKSSQMS*TN*YETTR*TAWST 321
           +PTS  TF  S F   S  P ++     + S         SS  + T+   T+   + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731

Query: 322 PINFGSXAPRTSSGIVSQLSSDLSS 396
           P++  S  P + S   S+LSS L+S
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTS 756


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 422 VHKLNRVFGEDKSELNWETIPDDVL 348
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 519 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTXWNG 629
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 177 QLYNSVVVADYDSAVEKSKHLYEEKKS 257
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 337 SXAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 438
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 367 VSQLSSDLSSPKTRLSLCTSATV 435
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 249 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 341
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 504 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGT 617
           K SP+V+WK   +W + K   K +++      +LG G+
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGS 64


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -1

Query: 713  DVXVVLSRLQXPLGXETIDAVDSEGHMVAVPXSXDSQYQVLVTFSVQDLEVDLVVLPQSD 534
            D   +L+R+   LG   +D + SEGH++A       +   +VT ++ D +  L  +P  D
Sbjct: 1947 DQKFILTRVHNLLGA-CVDTLSSEGHLIA--CIRPMEMSQMVTQALWDRDSPLKQIPYFD 2003


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,571
Number of Sequences: 5004
Number of extensions: 50547
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)