Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P11
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.075
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.30 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.92 
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    28   2.1  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   2.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   4.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.9  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   4.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   8.6  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.075
 Identities = 19/62 (30%), Positives = 23/62 (37%)
 Frame = +3

Query: 645 PXXPPTPXH*ASILNXSXXLNISFXIPXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXX 824
           P  P  P      L  S   ++    P     PP +P + PP P   P  PPLP      
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA-PPLPAGMPAAPPLPPAAPAP 476

Query: 825 PP 830
           PP
Sbjct: 477 PP 478



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
 Frame = +3

Query: 720 IPXXXXXPPXSPXSHPP-----XPFPXPXXPPLPXXXHXXPPPXIKIXLXSFXPTPXIXP 884
           +P     PP +P S PP      P   P  PPLP      PP  +   + +  P P   P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP--LPAGMPAAPPLPPAAP 474



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +3

Query: 750 SPXSHPPXPFPXPXXPPLPXXXHXXPPPXIKIXLXSFXPTPXIXP 884
           S  S PP P P    P  P       PP + +   +  P P   P
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
 Frame = +3

Query: 723  PXXXXXPPXSPXSHPPXPF---PXPXXPPLPXXXHXXPPPXIKIXLXSFXPTP 872
            P     P  S  + PP P    P P  PP+P      PPP +        P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 741 PPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
           PP +     P P P P  PP P      PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 741 PPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
           PP  P    P P P P   P P      PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 27/113 (23%), Positives = 45/113 (39%)
 Frame = +3

Query: 84  PHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTK 263
           P S S   + A    +      L +   V R    F + +EH+     K+LE+Q + L +
Sbjct: 171 PSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQ 229

Query: 264 SKDAQDFSKAWKDGSESVLQQLNAFAKSLQAALGDANGKAXEALXQSRQNIXR 422
           SKDA     A      S+     +   S + +L   N K+  +L     ++ R
Sbjct: 230 SKDASSNLTACNRSGSSLSSNFYSSRLSKKTSLASLN-KSRASLQHKIMSLSR 281


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 723  PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPP 830
            P     P  +P   PP P P    PP+P      PP
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 723  PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPP 830
            P     P   P + PP P P    PP+P      PP
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +3

Query: 720  IPXXXXXPPX-SPXSHPPXPFPXPXXPPLPXXXHXXPP 830
            IP     PP  +P   PP P P    PP+P      PP
Sbjct: 1076 IPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +3

Query: 723  PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
            P     P  +P   PP P P    PP+P      P P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
 Frame = +3

Query: 723  PXXXXXPPXSPXSH-PPXPFPXPXXPPLPXXXHXXPPPXIKIXLXSFXPTPXIXP 884
            P     P  +P S  PP P P    PP+P      P P   + +    P     P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +3

Query: 741  PPXSPXSH-PPXPFPXPXXPPLPXXXHXXPPP 833
            PP  P S  PP P P    PP+P      P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
 Frame = +3

Query: 723  PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPPPXIKIXLXSF-XPTPXIXPXXK 893
            P     P   P   PP P P    PP+P      P P   +       P+  I P  K
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
 Frame = +3

Query: 720  IPXXXXXPPXSPXS--HPPXPFPXPXXPPLPXXXHXXPP 830
            +P     PP    S   PP P P    PP+P      PP
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 213 TKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQA-ALGDA 371
           +K+   + E+Q   +T      DFS   K   +     L+AF K L+A + GDA
Sbjct: 89  SKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDA 142


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 297 KDGSESVLQQLNAFAKSLQAALGDANGKAXEALXQSRQNIXRTAEE 434
           KDG+++   +LN FAK L  +    + +A +   +    I +++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +3

Query: 177 DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 296
           D   +F D++ H K FH   E+  +   +  +K   D  K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXG 743
           GGG      GRGG  G   G GG   G  G
Sbjct: 37  GGGRGGARGGRGGRGGARGGRGGSSGGRGG 66


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 171 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT 260
           ++   DFFK +    ++ H TL ++ NSL+
Sbjct: 56  KKSEQDFFKMLSSRDRDAHSTLRKRSNSLS 85


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 723 PXXXXXPPXSPXSHPPXPFPXPXXP 797
           P     PP SP S PP P   P  P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIP 168


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +3

Query: 768 PXPFPXPXXP-PLPXXXHXXPPPXIKIXL-XSFXPTP 872
           P   P P  P P P   H  PPP ++  +  S  P P
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 141 CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLEQQFNSLTKSKDAQDFSKAWKDGSESV 317
           C  + +G  +RR  P +++ I      ++ KTL + FN+  + +++  + KA ++G   V
Sbjct: 13  CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72

Query: 318 LQQL 329
             Q+
Sbjct: 73  NNQI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,013
Number of Sequences: 5004
Number of extensions: 40550
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)