Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_P11
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 36 0.040
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 34 0.12
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 34 0.12
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 34 0.12
AF024502-4|AAB70374.1| 675|Caenorhabditis elegans Hypothetical ... 33 0.22
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.28
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.28
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 33 0.38
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 32 0.66
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.66
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.66
U88172-5|AAB42260.1| 483|Caenorhabditis elegans Hypothetical pr... 32 0.66
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 0.66
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 32 0.66
AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical ... 31 0.87
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 31 1.5
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 31 1.5
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 30 2.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.7
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p... 30 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.7
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 29 3.5
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.5
AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical ... 29 3.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.6
U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical pr... 29 4.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.6
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 4.6
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 6.1
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 6.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 6.1
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 8.1
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 35.9 bits (79), Expect = 0.040
Identities = 21/86 (24%), Positives = 29/86 (33%)
Frame = +3
Query: 576 TGXQDQAAYXDFPKNXPXRXXEHPXXPPTPXH*ASILNXSXXLNISFXIPXXXXXPPXSP 755
T ++ + +P++ P P PP P A + S PP P
Sbjct: 3 TAAEEYKSQTTYPESAPAATTPQPPPPPPPPKPAPYVEQSAQ--------PQQTAPPPPP 54
Query: 756 XSHPPXPFPXPXXPPLPXXXHXXPPP 833
+P P P PP P H P P
Sbjct: 55 APYPQQAVPAPAPPPAPYPQHAVPAP 80
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/74 (25%), Positives = 25/74 (33%)
Frame = +3
Query: 612 PKNXPXRXXEHPXXPPTPXH*ASILNXSXXLNISFXIPXXXXXPPXSPXSHPPXPFPXPX 791
P P + P PP P ++ + L PP +P +P P P
Sbjct: 54 PAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAP--YPQHAVPAPA 111
Query: 792 XPPLPXXXHXXPPP 833
PP P H P P
Sbjct: 112 PPPAPYPQHAVPAP 125
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 723 PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
P P PP P P P PP P H PPP
Sbjct: 118 PQHAVPAPAPYQQQPPPPPPPPHYPPPP--PHYPPPP 152
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 872 GGGPKAXQXYFYXGGGXXVTRXGKGXXXGPREXXGGVGXGXXGGXXXXXW 723
GGG + Y GG G+G GP++ GG G G GG W
Sbjct: 245 GGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGW 294
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 872 GGGPKAXQXYFYXGGGXXVTRXGKGXXXGPREXXGGVGXGXXGGXXXXXW 723
GGG + Y GG G+G GP++ GG G G GG W
Sbjct: 207 GGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGW 256
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 872 GGGPKAXQXYFYXGGGXXVTRXGKGXXXGPREXXGGVGXGXXGGXXXXXW 723
GGG + Y GG G+G GP++ GG G G GG W
Sbjct: 245 GGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGW 294
>AF024502-4|AAB70374.1| 675|Caenorhabditis elegans Hypothetical
protein M151.2 protein.
Length = 675
Score = 33.5 bits (73), Expect = 0.22
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Frame = +3
Query: 174 RDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ 353
R D K++E++ + L++Q N K+KD + K+ K + + A A+ LQ
Sbjct: 105 RKKDDKLKELENNAEALKTQLQEQTNDAKKAKD--ELQKSLKSAAARATEATTAVAE-LQ 161
Query: 354 AALGDANGK-------AXEALXQSRQNIXRTAEELRK 443
A L + A EAL +QN R EL+K
Sbjct: 162 AKLQTVEKEHKKEIEDAKEALAAEKQNSEREKMELKK 198
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -2
Query: 872 GGGPKAXQXYFYXGGGXXVTRXGKGXXXGPREXXGGVGXGXXGGXXXXXW 723
GGG Y GG G+G GP++ GG G G GG W
Sbjct: 208 GGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGW 257
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -2
Query: 872 GGGPKAXQXYFYXGGGXXVTRXGKGXXXGPREXXGGVGXGXXGGXXXXXW 723
GGG Y GG G+G GP++ GG G G GG W
Sbjct: 246 GGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGW 295
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 32.7 bits (71), Expect = 0.38
Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Frame = +2
Query: 584 PRSGRLXRLPEEXPXTXSXTSXXAAHPXALSVDIEXLTXPX--YFFSYPTXXXSPPPLXX 757
P +G + P P + S T A P + + + T Y +Y PPP
Sbjct: 327 PSAGYFFQAPPPAPASSSSTVPPAVSPFGVPLGAQPSTTSSTTYSSNYSNPSYPPPPKVD 386
Query: 758 FPPPXXXPXARXTXPSXXXSXXPPPL 835
PPP R P S PPL
Sbjct: 387 LPPPGIVQLDRVVYP--PVSPPSPPL 410
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGGXXXXCG 722
GGG G GG G G G GG G GG CG
Sbjct: 143 GGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 179
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGGXXXXCG 722
GGG G GG G G G G G GG CG
Sbjct: 135 GGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCG 171
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGGX-XXXCG 722
GGG G GG G G G GG G GG CG
Sbjct: 150 GGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCG 187
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGGXXXXCG 722
GGG G GG G G G GG G GG CG
Sbjct: 104 GGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 140
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGGX-XXXCG 722
GGG G GG G G G GG G GG CG
Sbjct: 111 GGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCG 148
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGGXXXXCG 722
GGG G GG G G G GG G GG CG
Sbjct: 104 GGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 140
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGGX-XXXCG 722
GGG G GG G G G GG G GG CG
Sbjct: 111 GGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCG 148
>U88172-5|AAB42260.1| 483|Caenorhabditis elegans Hypothetical
protein ZK354.8 protein.
Length = 483
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 741 PPXSPXSHPPXPFPXPXXPPLPXXXHXXPPPXIKIXLXSFXPTPXIXP 884
PP P PP P P L PP I L P P I P
Sbjct: 93 PPSDPPPPPPPVAPHQPPPQLATSAQPPQPPVINSQLPRMSPAPAIPP 140
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGG 740
GGG GRGG G G G GG G GG
Sbjct: 101 GGGRGGGGGGRGGGGGGGGGRGGGGGGRGGG 131
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 829 GGXX*XXXGRGGXXGXGXGXGGWEXGEXGG 740
GG GRGG G G G GG G GG
Sbjct: 85 GGGGNGGGGRGGGGGGGGGRGGGGGGRGGG 114
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGG 740
GGG GRGG G G G W GG
Sbjct: 58 GGGGSGWGGGRGGGWGNNGGGGNWGGNGGGG 88
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
protein C18H2.1 protein.
Length = 1770
Score = 31.9 bits (69), Expect = 0.66
Identities = 24/80 (30%), Positives = 39/80 (48%)
Frame = +3
Query: 39 DFDTLLCVAVRFASPPHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTK 218
DF+ LL V +F+ + + Y K V C++ + + D +F KDI+ K
Sbjct: 552 DFNKLLEVH-KFSKRFYEFTN-YFKNNKPKVFLECVSRLRKTAI--DGENFVKDIQKTYK 607
Query: 219 EFHKTLEQQFNSLTKSKDAQ 278
+ HKTLE + + K +D Q
Sbjct: 608 KSHKTLESDSSPVLKLEDPQ 627
>AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical
protein ZK973.11 protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 216 KEFHKTLEQQFNSLTKSKDAQD-FSKAWKDGSESVLQ 323
+EFHKT E+ L K D + F AW DGS+ Q
Sbjct: 266 REFHKTAEEASKELRKHPDLWNRFQFAWLDGSDLASQ 302
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 723 PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPP 830
P PP P PP P P PP+P PP
Sbjct: 79 PLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPP 114
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 723 PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPP 830
P PP P PP P P PP+P PP
Sbjct: 301 PLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPP 336
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/63 (34%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = +3
Query: 714 FXIPXXXXXPPXSPX-SHPPXPFPXPXXPPLPXXXHXXPPPXIKIXLXSFXPTPXIXPXX 890
F P P P H P PFP P P P H P P K L P P P
Sbjct: 37 FPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKH-KPKPFPKPMLFP-KPMPFPKPMP 94
Query: 891 KKK 899
K K
Sbjct: 95 KSK 97
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +3
Query: 645 PXXPPTPXH*ASILNXSXXLNISFXIPXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXX 824
P PP P I +P PP P PP P P PP P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP--PPGGCPPPPPPPPPGGFKGG 783
Query: 825 PPP 833
PPP
Sbjct: 784 PPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +3
Query: 645 PXXPPTPXH*ASILNXSXXLNISFXIPXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXX 824
P PP P I +P PP P PP P P PP P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP--PPGGCPPPPPPPPPGGFKGG 783
Query: 825 PPP 833
PPP
Sbjct: 784 PPP 786
>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
protein R05D3.1 protein.
Length = 1053
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 159 GAMVRRDAPDFFKDIEHHTKEFH--KTLEQQFNSLTKSKDAQDFSKAWKDGSES 314
G +A ++F D++HHT F T + + +D D K W SE+
Sbjct: 519 GTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWIRRSEN 572
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +3
Query: 645 PXXPPTPXH*ASILNXSXXLNISFXIPXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXX 824
P PP P I +P PP P PP P P PP P
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP--PPGGCPPPPPPPPPGGFKGG 366
Query: 825 PPP 833
PPP
Sbjct: 367 PPP 369
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 723 PXXXXXPPXSPXSHP-PXPFPXPXXPPLPXXXHXXPPP 833
P PP SP P P P P PP P PPP
Sbjct: 88 PLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPP 125
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/58 (25%), Positives = 22/58 (37%)
Frame = +3
Query: 711 SFXIPXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPPPXIKIXLXSFXPTPXIXP 884
+F P P +P P PF P PP+ P + + +F P P + P
Sbjct: 89 AFAAPAPVFAAPPAPVLAAPAPFLAPPVPPVAPIVSAFAPRPV-LAAPAFAPAPILAP 145
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 759 SHPPXPFPXPXXPPLPXXXHXXPPP 833
S PP P P P PP P PPP
Sbjct: 175 SAPPPPRPPPQEPPKPVEQAAPPPP 199
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 723 PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
P PP P PP P P PP P PPP
Sbjct: 266 PPRTGSPPPPPTGSPPPP-PAGGSPPPPRAGSPPPPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 723 PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
P PP P PP P P PP P PPP
Sbjct: 287 PPRTGSPPPPPTGSPPPP-PAGGSPPPPRAGSPPPPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 723 PXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
P PP P PP P P PP P PPP
Sbjct: 272 PPRTGSPPPPPTGSPPPP-PAGGSPPPPRAGSPPPPP 307
>AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical
protein Y47D7A.7 protein.
Length = 121
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 716 SYPTXXXSPPPLXXFPPPXXXPXARXTXPSXXXSXXPPP 832
SYPT P P +P P P A + S PPP
Sbjct: 25 SYPTTPSYPTPPPSYPTPKKYPVAPTYPSTPSYSAQPPP 63
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 741 PPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
PP S PP P P P P P PPP
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
>U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical
protein T14E8.4 protein.
Length = 475
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 560 CTFEDTLFANLWDSCTVFCTAACXFSRRAVAXFSTC 453
C DT+FA+ SC CT S+ ++ STC
Sbjct: 98 CNRNDTVFADKLQSCREMCTRPDCVSKIELSEVSTC 133
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 741 PPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
PP S PP P P P P P PPP
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +2
Query: 713 FSYPTXXXSPPPLXXFPPPXXXPXARXTXPSXXXSXXPPPLDKNXFXQL-XAHPXN*XSP 889
FS+ S PP PPP P ++ T P + P D+ F + P N P
Sbjct: 145 FSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPPPAQQKPSSDREQFRTMRPLRPANDVKP 204
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +3
Query: 768 PXPFPXPXXPPLPXXXHXXPPPXIKIXLXSFXPTPXIXP 884
P P P PP P PPP + ++ P P P
Sbjct: 30 PEPMPVCATPPCPPQYAPLPPPPMPAPAPAYNPYPCANP 68
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = +3
Query: 741 PPXSPXSHPPXP--FPXPXXPPLPXXXHXXPPP 833
PP +P PP P P P P P PPP
Sbjct: 459 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPP 491
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 832 GGGXX*XXXGRGGXXGXGXGXGGWEXGEXGG 740
GGG GRGG G G G GG+ G GG
Sbjct: 30 GGGGGGYSGGRGGGYG-GGGGGGYGGGGYGG 59
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +3
Query: 741 PPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
PP P +PP P P P + PPP
Sbjct: 105 PPGYPAGYPPYGMPPRHHPGYPHPAYGYPPP 135
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Frame = +3
Query: 723 PXXXXXPPXSPXSH-PPXPFPXPXXPPLPXXXHXXPPPXIK--IXLXSFXPTP 872
P PP P PP P P PP P PPP + S+ P P
Sbjct: 42 PLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAP 94
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +2
Query: 722 PTXXXSPPPLXXFPPPXXXPXARXTXPSXXXSXXPPP 832
P +PPPL PPP P P PPP
Sbjct: 34 PPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPP 70
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = +3
Query: 741 PPXSPXSHPPXP--FPXPXXPPLPXXXHXXPPP 833
PP +P PP P P P P P PPP
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPP 498
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/64 (25%), Positives = 22/64 (34%)
Frame = +3
Query: 654 PPTPXH*ASILNXSXXLNISFXIPXXXXXPPXSPXSHPPXPFPXPXXPPLPXXXHXXPPP 833
PP P + +S P PP + S P P P P PP PP
Sbjct: 474 PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPPALEQEISGPP 533
Query: 834 XIKI 845
+++
Sbjct: 534 TVRL 537
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 741 PPXSPXSHPPXPFPXPXXPPLP 806
PP P + PP FP PPLP
Sbjct: 429 PPPLPMAGPPGMFPMMPPPPLP 450
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +3
Query: 741 PPXSPXSHPPXPFPXPXXPPLPXXXHXXPPPXIKIXLXSFXPTPXIXPXXKKKC 902
PP SP PP P P P P P PPP P + P +C
Sbjct: 244 PPPSPVCMPPPPPPCPMPIPCP-----PPPPACSCPPPVTMYQPCMVPQYVPRC 292
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Frame = +3
Query: 720 IPXXXXXPPXSPXSHPPXP--FPXPXXPPLPXXXHXXPPP 833
+P PP P PP P F PP P PPP
Sbjct: 69 VPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPP 108
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 723 PXXXXXPPXSPXSHPPXPFPXPXXPPLP 806
P PP +P + PP P P P P P
Sbjct: 128 PPRTCCPPPTPAAPPPPPPPPPPAPEAP 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,223,642
Number of Sequences: 27780
Number of extensions: 287100
Number of successful extensions: 1898
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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