Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P09
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0313 - 29159638-29161065                                         29   4.9  
03_04_0076 - 17068516-17068838,17068897-17069198,17069282-170694...    28   8.6  
03_03_0189 - 15287429-15287437,15288006-15288359                       28   8.6  

>05_07_0313 - 29159638-29161065
          Length = 475

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 319 LPALAPRAPRTLFTIASPLSSDLYSQKTTLSLCTSVTGS 435
           LPA   +A RT   +A+PLS D  +Q+  LSL    T +
Sbjct: 16  LPAAFSKAVRTQSLLANPLSPDPITQEQQLSLAAPRTNA 54


>03_04_0076 -
           17068516-17068838,17068897-17069198,17069282-17069435,
           17069506-17069965,17070413-17070492,17070813-17070869,
           17071757-17071838
          Length = 485

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 105 SCVFPRRLCMPTQPPSTTPL*RTSFTTASSL 197
           SCV P     P  PPS+TP  RT F   S L
Sbjct: 434 SCVMPSPDLYPWLPPSSTPRFRTVFLLMSFL 464


>03_03_0189 - 15287429-15287437,15288006-15288359
          Length = 120

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 154 VDGGCVGIQRRRGKTQDDKNGLH 86
           VD GC   QRR+  T D ++G H
Sbjct: 93  VDVGCTRRQRRKSATTDSRHGFH 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,609,476
Number of Sequences: 37544
Number of extensions: 283920
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)