Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P09
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    29   4.4  
AC024794-5|AAK68500.1|  320|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical
           protein Y54G11A.4 protein.
          Length = 497

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 658 FRTQWYLXPXKYXHDXLFXIYXXEYXXAL-VLSRXXVXRGXKLD 786
           +R  W L    Y H  LF I   EY  AL +  R  V R  K+D
Sbjct: 244 WRQGWMLAAHNYWHTALFHIESAEYEPALEIFDREIVKRSSKVD 287


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
           protein ZK512.3 protein.
          Length = 1418

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 640 LRRAMWPXCPLVF-TPNVKYWLRLVFKIL 557
           +RRA  P     + TP VKYWL L+F+I+
Sbjct: 736 IRRAHAPTLSTFYSTPIVKYWLSLLFRIV 764


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 640 LRRAMWPXCPLVF-TPNVKYWLRLVFKIL 557
           +RRA  P     + TP VKYWL L+F+I+
Sbjct: 345 IRRAHAPTLSTFYSTPIVKYWLSLLFRIV 373


>AC024794-5|AAK68500.1|  320|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.8 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 405 IKLMYKRHGLALTLGDSD-INGRIAFGDSKDKTSPRVSWMFIPL 533
           +KL+  RHG   T  DSD        G S D+T P V+ +FI L
Sbjct: 41  VKLLPYRHGSNTTSSDSDSFILNSGSGSSDDETPPPVAPIFISL 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,066,929
Number of Sequences: 27780
Number of extensions: 241696
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)