Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P07
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.053
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    27   4.6  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   8.0  

>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +3

Query: 144 YRRSIKDINDLNRDLQATGWRILKNEKASPPRGVDIHKRDESKLKTIPSTASTLLIPDQQ 323
           Y + I+ +++ N++LQA   ++  ++   P    +  + ++  L+ I     + ++  ++
Sbjct: 99  YIKEIERLSNSNKNLQAAVLQMAVSDTDDPRLKEEYKQTEKELLREISGNHKSKILKLEE 158

Query: 324 ---DLEHPTKAQQRKETEVVDSANNN 392
              DL+H  K  Q   T+++D A NN
Sbjct: 159 ELNDLKHSMKEMQLYMTKIIDKAMNN 184


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 285 PSTASTLLIPDQQDLEHPTKAQQRKETEVVDSANNNLFD 401
           P   S   +P Q DLE P+ A    +  ++D   +  +D
Sbjct: 30  PKCFSNSKLPHQSDLEEPSSACSLSKNTIIDGGADEPYD 68


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 120 QDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEKASPPRGVDIHKRDESKLKTIPS 290
           Q V A S+Y  S ++  D +++ +A     L     + P+   +HK  E +   IPS
Sbjct: 7   QSVFARSLYEDSAENKVDSSKNTEANFPITLPKVLPTDPKASSLHKPQEQQPNIIPS 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,860
Number of Sequences: 5004
Number of extensions: 46704
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)