Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_P07
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical pr... 31 0.81
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.4
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 30 1.9
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 30 1.9
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 4.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 4.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.7
AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical ... 28 7.5
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 28 10.0
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 28 10.0
>Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical
protein ZK858.6 protein.
Length = 619
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +3
Query: 87 FAVL--LIVSISIQDVAAVSVYRRSIKDINDLNRD------LQATGWRILKNEKASPP 236
F++L ++V +S+ +V++ R +DI NRD L+ TGW+++ + PP
Sbjct: 258 FSILNSIVVVLSLSGFVSVTIVRTVRRDIAQYNRDDEEDDTLEETGWKLVHGDVFRPP 315
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 738 PVPPXPXPPXXNXRGPPHLPFTXGXNXXPPT*SPSIXXALXPP 866
PVPP P PP + P +P PP SPS+ PP
Sbjct: 1354 PVPPPPPPPPTMSKAPTGVPLP--VPPPPPLFSPSMILPPPPP 1394
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical
protein ZC101.2b protein.
Length = 1160
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 63 MKRAATVGFAVLLIVSISIQDVAAVSVYRRSIKDINDLNRDLQATGWRILKNEK 224
MKR++TV A+L ++ ++ D A YR++ +DI+ + D + +EK
Sbjct: 1 MKRSSTVLAALLALLLVATNDAARHRKYRQTYQDIDSDDDDTSDVQITVFPSEK 54
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 74 CDGWLRCSANREHFHSRCRSSQCIQKVHKR--HKRL 175
CDG C N + S CRS+QC + R H RL
Sbjct: 3978 CDGDNDCGDNSDETSSECRSAQCDPPLRFRCAHSRL 4013
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 74 CDGWLRCSANREHFHSRCRSSQCIQKVHKR--HKRL 175
CDG C N + S CRS+QC + R H RL
Sbjct: 3978 CDGDNDCGDNSDETSSECRSAQCDPPLRFRCAHSRL 4013
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +3
Query: 744 PPXPXPPXXNXRGPPHLPFTXGXNXXPPT*SPSIXXALXPP 866
PP P PP PP +P T G PP P + PP
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPP---PPPSSGMWPP 298
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +3
Query: 744 PPXPXPPXXNXRGPPHLPFTXGXNXXPPT*SPSIXXALXPP 866
PP P PP PP +P T G PP P + PP
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPP---PPPSSGMWPP 308
>AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical
protein Y116A8C.18 protein.
Length = 358
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 32 FLKILTIFHQNEASCDGWLRCSAN--REHFHSRCRSSQCIQK 151
F KI+ QN C G RC N ++ S CR ++C+ +
Sbjct: 303 FRKIVIDSKQNSLKCSGSGRCKINTVTRNYCSYCRYAKCVSE 344
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
protein T23F2.2b protein.
Length = 1538
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 135 VSVYRRSIKDINDLNRDLQATGWRILKNEKASPPRGVDIHKRDESKLKTIP--STASTLL 308
+ VYR +I+D N + D + WR + S PR + +H ++ T S +
Sbjct: 573 MQVYRNTIQDHNLVVTDEKIENWR----KTMSDPRYMIMHSKEVQTTLTSQQLSEHESDF 628
Query: 309 IPDQQDLEHPTKAQQRKETEVVD 377
+ QQ L K K T +VD
Sbjct: 629 LSTQQTLHDLKKEYSAKNTTLVD 651
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
protein T23F2.2a protein.
Length = 1534
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 135 VSVYRRSIKDINDLNRDLQATGWRILKNEKASPPRGVDIHKRDESKLKTIP--STASTLL 308
+ VYR +I+D N + D + WR + S PR + +H ++ T S +
Sbjct: 573 MQVYRNTIQDHNLVVTDEKIENWR----KTMSDPRYMIMHSKEVQTTLTSQQLSEHESDF 628
Query: 309 IPDQQDLEHPTKAQQRKETEVVD 377
+ QQ L K K T +VD
Sbjct: 629 LSTQQTLHDLKKEYSAKNTTLVD 651
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,994,232
Number of Sequences: 27780
Number of extensions: 284739
Number of successful extensions: 1131
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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