Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P06
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.22 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.51 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 785 PPXXXGXGXPPPXXXXXNXPXFXPPPQXXXPPPPPP 892
           PP     G PPP           PPP    PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPPP 783



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
 Frame = +2

Query: 782 PPPXXXGXGXPPPXXXXXNXPXFXPPP--QXXXPPPPPP 892
           P P       PPP       P   PPP      PPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +2

Query: 779 TPPPXXXGXGXPPPXXXXXNXPXFXPPPQXXXPPPPPP 892
           +PPP       P P       P   P      PPPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +2

Query: 806 GXPPPXXXXXNXPXFXPPPQXXXPPPPPP 892
           G PPP       P F PP Q   PPPPPP
Sbjct: 7   GNPPPPPPP---PGFEPPSQP--PPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +2

Query: 812 PPPXXXXXNXPXFXP-PPQXXXPPPPPP 892
           PPP     N     P PPQ    PPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/93 (22%), Positives = 23/93 (24%), Gaps = 2/93 (2%)
 Frame = +2

Query: 620 PPPXXXXXXXXXXXXXNXXXKXXPPPPPKXXPXXXSSXXXXXXXXXXXXXXXXTPPPXXX 799
           PPP                    PPPPP+  P   +                  PPP   
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP--STGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 800 GXGXP--PPXXXXXNXPXFXPPPQXXXPPPPPP 892
           G   P  PP            P     PP  PP
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +2

Query: 785  PPXXXGXGXPPPXXXXXNXPXFXPPPQXXXPPPPPP 892
            PP       PPP       P   P P      PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 622  PPPXXGXSPKKTXXPQXXXKXXAPPPP 702
            PPP     P  +  P       APPPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,584
Number of Sequences: 5004
Number of extensions: 18872
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)