Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P05
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   2.1  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   4.9  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    26   6.5  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   8.5  

>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 411  KKLIKVYKMHAKCWLSXVLIICXLNIVYPHI--LTASLSEASKFCPRMLRTLI 563
            KK+ K +  H  C LS  LI C L   +P +   T      + FC  +L+ L+
Sbjct: 912  KKIPKEFIFHTICKLSKGLIPCFLMNAFPQLEKSTTLQKSCTNFCILILQLLL 964


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 142 PRRNHKHVVFYINCNNPTIIVYQVKFKFIKC 50
           P+ N   +  Y++ +NP    YQ++ K  +C
Sbjct: 590 PQLNSSTIGSYVHSHNPPYFDYQIRLKSYRC 620


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 414 FYLFNDSPRDIRKSELDPXKDTSV*DMNE--NS*KPVFYTFKTSLLKISACVKKF 256
           FYL  D  + +  +  D  +DT V D+ +   + K   ++ K  LLK    +K +
Sbjct: 73  FYLLEDLAKPVTNAGADADEDTIVKDLKKELENEKKANHSLKNELLKTREQIKNY 127


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 355 LXRIQFRFSDISGRVIK*IKNLLRFIKCTPSAGC 456
           L  I +RF D S   IK   NL+R I    S GC
Sbjct: 487 LSSIIYRFPDFSTLDIKIKLNLVRLISAIISCGC 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,546
Number of Sequences: 5004
Number of extensions: 55251
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)