Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P05
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula (ubiq...    29   6.1  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    29   6.1  
Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL032636-5|CAA21607.2|  500|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula
           (ubiquitin activating)homolog protein 1 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 161 VADVVTESELRAEFDELYLIDKNNKKSQDITSNFFTHAD 277
           +A  + +S + A     Y++D    +  DI  NFF HAD
Sbjct: 38  LATEILKSLVLAGVQSFYVVDDAKVEQADIGQNFFLHAD 76


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 173 VTESELRAEFDELYLIDKNNKKSQDITSNFFTHA 274
           VT+ E     D+L+++ K N+KS+D   + F +A
Sbjct: 409 VTKDEKEETIDDLFVVRKQNQKSEDDQEDGFGYA 442


>Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical
           protein T08G3.10 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 109 INCNNPTIIVYQVKFKFIKCPKKI 38
           +NCN P+  ++ +  K+I+C  K+
Sbjct: 98  LNCNPPSSYIFMIAMKYIQCITKV 121


>AL032636-5|CAA21607.2|  500|Caenorhabditis elegans Hypothetical
           protein Y40B1B.8 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -3

Query: 242 DFSYYFYLSNTAHQIQHVT---RFRSQHQRLQNLNEPPEKSQT 123
           DF Y    S+++HQ+          S HQ  QN + PP K+ T
Sbjct: 22  DFQYQNDFSSSSHQLPSTASGYSEHSSHQNFQNHSPPPGKATT 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,691
Number of Sequences: 27780
Number of extensions: 309731
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)