Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P05
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    29   0.078
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    29   0.078
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   5.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   5.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   8.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 28.7 bits (61), Expect = 0.078
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +1

Query: 313 WLSRIFVHILNR-RVLXRIQFRFSD---ISGRVI 402
           W+ R+F+HIL R  V+ R Q++F      SGRV+
Sbjct: 344 WVKRVFIHILPRLLVMRRPQYKFETNRYSSGRVL 377


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 28.7 bits (61), Expect = 0.078
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +1

Query: 313 WLSRIFVHILNR-RVLXRIQFRFSD---ISGRVI 402
           W+ R+F+HIL R  V+ R Q++F      SGRV+
Sbjct: 344 WVKRVFIHILPRLLVMRRPQYKFETNRYSSGRVL 377


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 313 WLSRIFVHILNRRVLXR 363
           W+ R+F+H+L R ++ R
Sbjct: 340 WVRRVFIHVLPRLLVMR 356


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 38  DFFWALDKFKFDLINYDGRVITIYIK 115
           D+    D    D I  +GR++T YIK
Sbjct: 20  DYTTKYDDMDIDRILQNGRILTNYIK 45


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 38  DFFWALDKFKFDLINYDGRVITIYIK 115
           D+    D    D I  +GR++T YIK
Sbjct: 20  DYTTKYDDMDIDRILQNGRILTNYIK 45


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -2

Query: 726 VVGXQIXXFGGLXXGVGYNXGLIILWWNXNFLI 628
           V G  +     L  G+GY   ++  W N  +++
Sbjct: 47  VGGLGVFKIAPLFKGIGYAAAVMSCWMNVYYIV 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,894
Number of Sequences: 438
Number of extensions: 4063
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)