Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P04
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    25   1.2  
02_05_1067 - 33858215-33858321,33858422-33858527,33859014-338592...    29   5.2  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   6.8  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 25.0 bits (52), Expect(2) = 1.2
 Identities = 16/59 (27%), Positives = 18/59 (30%)
 Frame = +2

Query: 722 PPPPPXXGXXXFFFXXXXXXXPXXXXXXXPXXPXXPXPXXPXXXXGXXPXXPXPXGXPP 898
           PPPPP       ++       P       P  P  P P  P       P  P P   PP
Sbjct: 82  PPPPPQ-----MYYQPPPPPPPYGVNSSQPPPPPPPPPSPPP---SAPPPPPPPPTQPP 132



 Score = 24.6 bits (51), Expect(2) = 1.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 683 PXGGXXPXFXXXXPPPPP 736
           P  G  P F    PPPPP
Sbjct: 43  PPQGAPPPFLAPPPPPPP 60


>02_05_1067 -
           33858215-33858321,33858422-33858527,33859014-33859218,
           33859463-33859650,33859780-33859957,33860201-33860298,
           33860619-33860873,33861002-33861236,33861846-33861973
          Length = 499

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 215 TL*PIFSRSLKKLPGAAETEAVAKTIANTK 126
           TL P+FS +LKKL  + E+EA  K+ +  K
Sbjct: 457 TLRPVFSSALKKLEESLESEATKKSKSGDK 486


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/63 (26%), Positives = 17/63 (26%)
 Frame = +3

Query: 711 PXXXXPPPPXGXXGXFFFXXXPXXXPXXXXXXXPXXXXXPXXXXPPXXGGXXXXPXPPXX 890
           P    PPPP G    F     P   P             P    PP        P PP  
Sbjct: 546 PPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPP 605

Query: 891 XPP 899
            PP
Sbjct: 606 PPP 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,095,612
Number of Sequences: 37544
Number of extensions: 253381
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)