Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_P04
(917 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.7
U40028-5|AAA81116.1| 137|Caenorhabditis elegans Hmg protein 11 ... 29 6.2
AF056578-1|AAC78600.1| 137|Caenorhabditis elegans high mobility... 29 6.2
AF016446-13|AAC24172.1| 349|Caenorhabditis elegans Seven tm rec... 28 8.1
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/72 (29%), Positives = 21/72 (29%)
Frame = +2
Query: 683 PXGGXXPXFXXXXPPPPPXXGXXXFFFXXXXXXXPXXXXXXXPXXPXXPXPXXPXXXXGX 862
P G P PPPPP G P P P P P G
Sbjct: 242 PPKGSPPLAGSGSPPPPPAAGSPP---PPRTGSPPPPPTGSPPPPPAGGSP--PPPRAGS 296
Query: 863 XPXXPXPXGXPP 898
P P P G PP
Sbjct: 297 PPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/72 (29%), Positives = 21/72 (29%)
Frame = +2
Query: 683 PXGGXXPXFXXXXPPPPPXXGXXXFFFXXXXXXXPXXXXXXXPXXPXXPXPXXPXXXXGX 862
P G P PPPPP G P P P P P G
Sbjct: 263 PPKGSPPLAGSGSPPPPPAAGSPP---PPRTGSPPPPPTGSPPPPPAGGSP--PPPRAGS 317
Query: 863 XPXXPXPXGXPP 898
P P P G PP
Sbjct: 318 PPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/72 (29%), Positives = 21/72 (29%)
Frame = +2
Query: 683 PXGGXXPXFXXXXPPPPPXXGXXXFFFXXXXXXXPXXXXXXXPXXPXXPXPXXPXXXXGX 862
P G P PPPPP G P P P P P G
Sbjct: 248 PPKGSPPLAGSGSPPPPPAAGSPP---PPRTGSPPPPPTGSPPPPPAGGSP--PPPRAGS 302
Query: 863 XPXXPXPXGXPP 898
P P P G PP
Sbjct: 303 PPPPPPPRGSPP 314
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +3
Query: 711 PXXXXPPPPXGXXGXFFFXXXPXXXPXXXXXXXPXXXXXPXXXXPPXXGGXXXXPXPPXX 890
P PPPP G P P PP GG P PP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 891 XPP 899
PP
Sbjct: 768 CPP 770
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/72 (26%), Positives = 19/72 (26%)
Frame = +2
Query: 683 PXGGXXPXFXXXXPPPPPXXGXXXFFFXXXXXXXPXXXXXXXPXXPXXPXPXXPXXXXGX 862
P G P PPPPP G P P P P P G
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPI------SGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 863 XPXXPXPXGXPP 898
P P P P
Sbjct: 784 PPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +3
Query: 711 PXXXXPPPPXGXXGXFFFXXXPXXXPXXXXXXXPXXXXXPXXXXPPXXGGXXXXPXPPXX 890
P PPPP G P P PP GG P PP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 891 XPP 899
PP
Sbjct: 768 CPP 770
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/72 (26%), Positives = 19/72 (26%)
Frame = +2
Query: 683 PXGGXXPXFXXXXPPPPPXXGXXXFFFXXXXXXXPXXXXXXXPXXPXXPXPXXPXXXXGX 862
P G P PPPPP G P P P P P G
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPI------SGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 863 XPXXPXPXGXPP 898
P P P P
Sbjct: 784 PPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +3
Query: 711 PXXXXPPPPXGXXGXFFFXXXPXXXPXXXXXXXPXXXXXPXXXXPPXXGGXXXXPXPPXX 890
P PPPP G P P PP GG P PP
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Query: 891 XPP 899
PP
Sbjct: 351 CPP 353
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/72 (26%), Positives = 19/72 (26%)
Frame = +2
Query: 683 PXGGXXPXFXXXXPPPPPXXGXXXFFFXXXXXXXPXXXXXXXPXXPXXPXPXXPXXXXGX 862
P G P PPPPP G P P P P P G
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPI------SGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Query: 863 XPXXPXPXGXPP 898
P P P P
Sbjct: 367 PPPPPPPGMFAP 378
>U40028-5|AAA81116.1| 137|Caenorhabditis elegans Hmg protein 11
protein.
Length = 137
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 166 PRPKPWRKQ*RTRKRKFSRISFCIFAKSKLNVRAANGTESKS*GIPYS 23
P PKP+ R R RK +++ AKS + +A+ + +S G P S
Sbjct: 54 PAPKPYSGAPRGRPRKSDQVAKSPVAKSPVASSSADASPKRSRGAPKS 101
>AF056578-1|AAC78600.1| 137|Caenorhabditis elegans high mobility
group protein I alpha protein.
Length = 137
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 166 PRPKPWRKQ*RTRKRKFSRISFCIFAKSKLNVRAANGTESKS*GIPYS 23
P PKP+ R R RK +++ AKS + +A+ + +S G P S
Sbjct: 54 PAPKPYSGAPRGRPRKSDQVAKSPVAKSPVASSSADASPKRSRGAPKS 101
>AF016446-13|AAC24172.1| 349|Caenorhabditis elegans Seven tm
receptor protein 211 protein.
Length = 349
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -3
Query: 330 NIINVVTFCGI-I*ALSLSESFCFCQ--GVDCWSRADDGVSNPLTHF 199
N+I +F GI + ++S++ S F G+ CW R D S+ THF
Sbjct: 197 NVIYWPSFIGIMLDSMSINISLMFSAYFGIKCWLRMDAIFSSSSTHF 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,966,961
Number of Sequences: 27780
Number of extensions: 187428
Number of successful extensions: 497
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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