Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P02
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    47   3e-06
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    47   3e-06
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.9  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 23/33 (69%), Positives = 23/33 (69%)
 Frame = +1

Query: 292 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRA 390
           GKVHGSLARAGKVK QTPKVE         GRA
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRA 34



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 395 RRIQYNRRFVNVVXTFGRRRGPNSNS 472
           +R+ Y RRFVNV    G +R  N +S
Sbjct: 36  KRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 23/33 (69%), Positives = 23/33 (69%)
 Frame = +1

Query: 292 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRA 390
           GKVHGSLARAGKVK QTPKVE         GRA
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRA 34



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 395 RRIQYNRRFVNVVXTFGRRRGPNSNS 472
           +R+ Y RRFVNV    G +R  N +S
Sbjct: 36  KRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 530 GVXVXQN*CYFCILFTYKSMNWSW 459
           GV +     YFC+++T  S N+SW
Sbjct: 739 GVAIAGLFIYFCVVYTGGSSNFSW 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,304
Number of Sequences: 5004
Number of extensions: 39881
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)