Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P02
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    50   2e-06

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 24/36 (66%), Positives = 26/36 (72%)
 Frame = +1

Query: 283 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRA 390
           LLGGKVHGSLARAGKV+ QTPKV+         GRA
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRA 103



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 395 RRIQYNRRFVNVVXTFGRRRGPNSNS 472
           RR+QY RR+VNV    G++RGPNSNS
Sbjct: 105 RRVQYTRRYVNVASGPGKKRGPNSNS 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,916
Number of Sequences: 27780
Number of extensions: 273080
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)