Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P01
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    50   6e-07
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    50   6e-07
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   7.9  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +3

Query: 177 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 275
           R   TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 34.7 bits (76), Expect = 0.017
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +2

Query: 128 PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S    R   GP R
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTSRSIIRNVKGPVR 50


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +3

Query: 177 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 275
           R   TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 34.7 bits (76), Expect = 0.017
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +2

Query: 128 PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S    R   GP R
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTSRSIIRNVKGPVR 50


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 106 ISSXNTINTRAPKLACFGKANN*GIP**SKG 14
           +S   T+N    K +CFGKA N  IP  S+G
Sbjct: 716 VSGTATLNLGNVKDSCFGKAFNVEIPIISRG 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,751
Number of Sequences: 5004
Number of extensions: 40572
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)