Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_P01
(862 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28 pro... 59 2e-08
L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28 pro... 59 2e-08
CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein. 59 2e-08
BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28 p... 59 2e-08
BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28 p... 59 2e-08
BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28 p... 59 2e-08
BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28 p... 59 2e-08
AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28 p... 59 2e-08
>U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 2e-08
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 183 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 278
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.33
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 125 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 2e-08
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 183 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 278
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.33
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 125 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein.
Length = 69
Score = 59.3 bits (137), Expect = 2e-08
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 183 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 278
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.33
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 125 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 2e-08
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 183 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 278
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.33
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 125 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 2e-08
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 183 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 278
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.33
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 125 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 2e-08
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 183 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 278
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.33
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 125 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 2e-08
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 183 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 278
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.33
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 125 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 2e-08
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 183 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 278
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.33
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 125 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 265
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,265,752
Number of Sequences: 237096
Number of extensions: 1537481
Number of successful extensions: 2646
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2642
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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