Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_P01
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    54   2e-07

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 25/33 (75%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
 Frame = +3

Query: 183 QCTQVKVEFIGE-TSRQIIRNVKGPVRDGDILT 278
           QCTQV+VEFI +  +R IIRNVKGPVR+GDILT
Sbjct: 21  QCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 119 MDKPNVLARVVKVLGRTGSQG 181
           MDK   LARV KV+GRTGSQG
Sbjct: 1   MDKLT-LARVTKVIGRTGSQG 20


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,187
Number of Sequences: 27780
Number of extensions: 239131
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)