Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_O24
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.014
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.014
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.6  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   7.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   8.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPPP 737
           PPPPPP     P  PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 33.5 bits (73), Expect = 0.033
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPPPXG 743
           PPPPPP        PPPPP G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPPP 737
           PPPPPP     P   PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPPP 737
           PPPPPP    G   PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPPP 737
           PPPPP     GP  PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 32.7 bits (71), Expect = 0.057
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 654 PTXXTXLXXPPPPPPXXXXGPXXPPPPP 737
           P     +  PPPPPP        PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 680 PPAPPPXRXXRAXXPPPPPP 739
           PP PPP        PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPPP 737
           P PPP     GP  PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 680 PPAPPPXRXXRAXXPPPPPP 739
           PP PPP        PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.40
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPPPXG 743
           P PPP    G   PPPPP G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 681  PPPPPPXXXXGPXXPPPPP 737
            PPP  P    GP   PPPP
Sbjct: 1716 PPPSAPPMPAGPPSAPPPP 1734



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 648  THPTXXTXLXXPPPPPPXXXXGPXXPPPP 734
            T P     +  PP  PP     P  PPPP
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 684  PPPPPXXXXGPXXPPPPPXG 743
            PPPPP     P   PP P G
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAG 1726


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPP 734
           PPPPPP        P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPPPXG 743
           PPPPPP         P PP G
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQG 357



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPP 734
           PPPPPP         PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 751 GXXPXGGGGGXXGPXXXXGGGGGG 680
           G  P G GGG  G     GG GGG
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGG 264


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 681 PPPPPPXXXXGPXXPPPP 734
           PPPPP      P  PP P
Sbjct: 744 PPPPPVRSSISPSMPPAP 761


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 7.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 654 PTXXTXLXXPPPPPP 698
           P     L  PPPPPP
Sbjct: 229 PKQADPLPAPPPPPP 243



 Score = 21.0 bits (42), Expect(2) = 7.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 687 PPPPXXXXGPXXPPPPP 737
           PPPP     P  PP PP
Sbjct: 273 PPPPAT---PSQPPRPP 286


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPP 224



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 221 PPPPMHHEPGEHMPPPP 237



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 234 PPPPMHHEPGEHMPPPP 250



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 247 PPPPMHHEPGEHMPPPP 263



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 260 PPPPMHHEPGEHMPPPP 276



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 273 PPPPMHHEPGEHMPPPP 289



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 286 PPPPMHHEPGEHMPPPP 302



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 299 PPPPMHHEPGEHMPPPP 315



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 312 PPPPMHHEPGEHMPPPP 328



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 684 PPPPPXXXXGPXXPPPP 734
           PPPP     G   PPPP
Sbjct: 325 PPPPMHHEPGEHMPPPP 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,182,111
Number of Sequences: 5004
Number of extensions: 12441
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)