Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_O23
(922 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 37 0.023
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 33 0.38
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 33 0.38
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 33 0.38
U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-li... 31 0.88
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 30 2.7
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 30 2.7
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 29 4.7
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 28 8.2
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 36.7 bits (81), Expect = 0.023
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 885 GXXXGGXGX--WGGXGXXXGRGGGXSXW*GG 799
G GG G WGG G GRGGG S W GG
Sbjct: 37 GGRSGGWGRPGWGGGGPGWGRGGGGSGWGGG 67
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 873 GGXGXWGGXGXXXGRGGGXSXW*GGXXPNMXXGXXXXGXXXDXXGXR 733
GG G WGG G G GGG GG G G G R
Sbjct: 76 GGGGNWGGNG-GGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGR 121
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -2
Query: 900 GXXXXGXXXGGXGXWGGXGXXXGRGGGXSXW*G 802
G G GG G GG G G GG W G
Sbjct: 51 GGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGG 83
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 32.7 bits (71), Expect = 0.38
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 181 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 360
K KK+ S F + +T D YY + + + + + +TN V+E +K Y P + +
Sbjct: 51 KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99
Query: 361 FSVFYDKMRDEAIALFHLFYYAKD 432
+S +EAIA FH +Y K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 32.7 bits (71), Expect = 0.38
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 181 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 360
K KK+ S F + +T D YY + + + + + +TN V+E +K Y P + +
Sbjct: 51 KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99
Query: 361 FSVFYDKMRDEAIALFHLFYYAKD 432
+S +EAIA FH +Y K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 32.7 bits (71), Expect = 0.38
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 900 GXXXXGXXXGGXGXWGGXGXXXGRGGGXSXW*G 802
G G GG G WGG G GGG W G
Sbjct: 74 GGGNWGGNGGGRGDWGGNGGGGRGGGGRGDWGG 106
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -2
Query: 885 GXXXGGXGXWGG-XGXXXGRGGGXSXW 808
G GG G WGG G G GGG W
Sbjct: 23 GGWGGGPGRWGGWGGNRWGGGGGPGGW 49
>U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-like
protein protein32 protein.
Length = 105
Score = 31.5 bits (68), Expect = 0.88
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 873 GGXGXWGGXGXXXGRGGGXSXW*GG 799
G G WGG G GRGGG + GG
Sbjct: 74 GRGGGWGGRGGGWGRGGGGRGFYGG 98
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 349 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 483
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 349 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 483
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 900 GXXXXGXXXGGXGXWGGXGXXXGRGGGXSXW*GG 799
G G GG G +GG G G GGG GG
Sbjct: 592 GSGNGGGGNGGGGGFGGGGQRSGGGGGFQSGGGG 625
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 900 GXXXXGXXXGGXGXWGGXGXXXGRGGGXSXW*GG 799
G G GG G +GG G GGG S GG
Sbjct: 52 GGGGGGGGGGGGGGFGGGNGGFGGGGGGSGGGGG 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,274,287
Number of Sequences: 27780
Number of extensions: 284447
Number of successful extensions: 1047
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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