Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_O17
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.36 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   5.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 20/79 (25%), Positives = 20/79 (25%), Gaps = 6/79 (7%)
 Frame = +3

Query: 603 PPPPPXXXXXXPXPXXPXPXXXXXPXXPPXXXXXXXXXXPXXPPXXX------PXXPXPX 764
           PPPPP           P          P           P  PP         P  P P 
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421

Query: 765 XXPXXXPXXXPPXXPPXXP 821
             P   P   PP  PP  P
Sbjct: 422 SLPPSAPPSLPPSAPPSLP 440


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/72 (25%), Positives = 18/72 (25%), Gaps = 2/72 (2%)
 Frame = +3

Query: 603  PPPPPXXXXXXPXPXXPXPXXXXXPXXPPXXXXXXXXXXPXXPPXXXPXXPXP--XXXPX 776
            P P P      P P    P         P          P  PP   P  P P     P 
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210

Query: 777  XXPXXXPPXXPP 812
              P   PP   P
Sbjct: 1211 PPPSTAPPVPTP 1222


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
 Frame = +3

Query: 603 PPPPPXXXXXXPXP-----XXPXPXXXXXPXXPPXXXXXXXXXXPXXPP 734
           PPPPP      P P       P P     P  PP          P  PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 148 AEIHCKFNVNSNADVKTPRRRCTDHLMCTIKNPL 47
           A++    +++ +  + TPRR     L CT++ PL
Sbjct: 73  ADMSMNMHIDESPALPTPRRTLFRSLSCTVETPL 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,991
Number of Sequences: 5004
Number of extensions: 15230
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)