Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_O15
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.71 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 745 PRRXTXPPXNPXTAPXXRPPPPXPP 819
           P     PP  P   P  +PPPP PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +1

Query: 673 PPTPXXPXPPXLRAXXXXXXXXXXPRRXTXPPXNPXTAPXXRPPPPXPP 819
           PP P    P    A                PP  P  A    PPPP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/63 (26%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
 Frame = +1

Query: 745 PRRXTXPPXNPXTAPXXRPPPPXPP-XTXXXAXXXXXXXXXXXXKLXXAPXPPXXTXXPX 921
           P   T    +P  AP   PPP  PP  T                     P PP     P 
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPP 283

Query: 922 LPP 930
            PP
Sbjct: 284 RPP 286


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 19/82 (23%), Positives = 22/82 (26%), Gaps = 2/82 (2%)
 Frame = +1

Query: 691 PXPPXLRAXXXXXXXXXXPRRXTXPPXNPXTAPXXRPPPPXPPXTXXXAXXXXXXXXXXX 870
           P PP  R+          P     PP    +     PP P P      A           
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411

Query: 871 XKLXXAPXPP--XXTXXPXLPP 930
                 P PP    +  P LPP
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPP 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,316
Number of Sequences: 5004
Number of extensions: 13756
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)