Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_O14
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 163 2e-40
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 163 2e-40
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 158 5e-39
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 30 2.1
07_01_0282 - 2070027-2070041,2074763-2075062,2075154-2075722,207... 29 6.4
05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194 29 6.4
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 28 8.4
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 8.4
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 163 bits (396), Expect = 2e-40
Identities = 78/137 (56%), Positives = 98/137 (71%)
Frame = +1
Query: 205 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYF 384
F TT SGAPV + TVG+ GP LL+D + +++++ FDRERIPERVVHA+GA A G+F
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFF 75
Query: 385 EVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRXFAVKFYTDDGVWDL 564
EVTHDI+ + A + G +TP+ VRFSTV E GS +T+RDPR FAVKFYT +G +DL
Sbjct: 76 EVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDL 135
Query: 565 VGNNTPXLFIRXPTLFP 615
VGNN P FIR FP
Sbjct: 136 VGNNMPVFFIRDGMKFP 152
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 163 bits (395), Expect = 2e-40
Identities = 77/135 (57%), Positives = 96/135 (71%)
Frame = +1
Query: 211 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 390
+T SGAPV TVG GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEV
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEV 77
Query: 391 THDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRXFAVKFYTDDGVWDLVG 570
THDIT + A + G +TP+ VRFSTV E GS +T+RDPR FA+KFYT +G WDLVG
Sbjct: 78 THDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVG 137
Query: 571 NNTPXLFIRXPTLFP 615
NN P FIR FP
Sbjct: 138 NNFPVFFIRDGMKFP 152
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 158 bits (384), Expect = 5e-39
Identities = 75/135 (55%), Positives = 93/135 (68%)
Frame = +1
Query: 211 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 390
TT +GAPV TVG GP LL+D + +++++ F RERIPERVVHA+GA A G+FE
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFEC 89
Query: 391 THDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRXFAVKFYTDDGVWDLVG 570
THD+T + A S G +TP+ VRFSTV E GS +T+RDPR FAVKFYT +G WDL+G
Sbjct: 90 THDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLG 149
Query: 571 NNTPXLFIRXPTLFP 615
NN P FIR FP
Sbjct: 150 NNFPVFFIRDGIKFP 164
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 250 IQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVF 429
++ +GK+ AL +D NF + SS D R+ E KG YF + + + A++
Sbjct: 32 MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLL 90
Query: 430 -ESIG 441
E IG
Sbjct: 91 KEQIG 95
>07_01_0282 -
2070027-2070041,2074763-2075062,2075154-2075722,
2075812-2076337
Length = 469
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 788 PPPPSXXVXSPXXWGTXXTPXTPXTP 865
PPPP SP G+ P TP TP
Sbjct: 426 PPPPPPHPPSPSAEGSASPPTTPGTP 451
>05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194
Length = 68
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 610 IMLDXL*RXWXYYFQLNPTLHHQYRTLQQNXEGHEQYQQIHSLHQLL 470
++ + L + W Q P + Y T++++ GHE YQ+ LL
Sbjct: 10 VLDNKLEQPWPQKLQPKPIVTDVYSTVKRDGHGHEMYQEFRFRRWLL 56
>04_04_1155 - 31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 28.3 bits (60), Expect = 8.4
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Frame = +1
Query: 280 LLQDVNFLDEMSSFDRERI-PERVVHA--KGAGAFGYFEVTHDITKYSAAKV-FESIGKR 447
+L D N ++S F ++ ++ H K AG FGY + + + KV + G
Sbjct: 725 VLLDANLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-- 782
Query: 448 TPIAVRFSTVGGESGSADTVRDPRXFAVKFYTDDGVWDLVGNNTPXLFIRXPTL 609
V T+ G DT+ + K Y + W+L NN P L I P L
Sbjct: 783 ---VVLLETLAGRPNYDDTLEED-----KIYIFEWAWELYENNNP-LGIVDPNL 827
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 302 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 192
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,200,024
Number of Sequences: 37544
Number of extensions: 420577
Number of successful extensions: 1096
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -