Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_O13
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    29   0.68 
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    29   0.90 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    28   2.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.4  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    26   8.4  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 359 PRSSLKNSPVITTFTKKSLVALSQSPEDLPSPHFPVPSDK 240
           P+S   +SP   + T+KS V      +++ S HF VP  K
Sbjct: 442 PKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHFSVPEFK 481


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -1

Query: 251 PSDKVVNIARVSD*P*KLAGDRILLCVTRRHRNLSVHAXQGMQRDN-NTLEYILNCDR 81
           P+DKVV +   +  P K A   +L C  R+ R+LSV   + ++RD+  + +++L  +R
Sbjct: 70  PADKVVEVVEKALGPHKSA---LLHCAIRQSRSLSVGNTRSLKRDSRGSSDHLLTRNR 124


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +1

Query: 757 PHXXPPXXPPXXPXXXP-XPPLXQFPPXXPPXXSSXYXFXLPHTPXIP 897
           P   PP  PP  P   P  PPL    P  PP  +      +P  P +P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG-----MPAAPPLP 470


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -1

Query: 416 VLSPPGPXTLVX*ACPVSLPRSSLKNSPVITTFTKKSLVALSQSPEDLPSPHFPVPSDKV 237
           V S   P +    A   SLP S +  +  +   +     +LS  P  +PS    +P+D +
Sbjct: 231 VSSDNPPVSTAASAYSSSLPISDVTRALPLAPASNSQHPSLSSQPVSVPSNTINIPTDSL 290

Query: 236 VNIARVSD*P*KLAGDRI 183
             ++  S  P K   +RI
Sbjct: 291 SIVSNPSQTPAKFDSNRI 308


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 416 VLSPPGPXTLVX*ACPVSLPRSSLKNSPVITTFTKKSLVALSQSPEDLPSP 264
           VL PP    +     PVSLP  +L + P+       +L  L   P  LP P
Sbjct: 152 VLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHP 202


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 769  PPXXPPXXPXXXPXPPLXQFPPXXPP 846
            PP  P   P     PP+   PP  PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 769 PPXXPPXXPXXXPXPPLXQFPPXXPP 846
           PP  PP  P      P  Q PP  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 344 KNSPVITTFTKKSLVALSQSPEDLPSPHF 258
           KN PV+  FT+ +L  +   PED+    F
Sbjct: 53  KNQPVVGFFTEDALKMVGTKPEDVMQVSF 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,509
Number of Sequences: 5004
Number of extensions: 45542
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)