Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_O13
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    31   0.85 
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    30   2.6  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   6.0  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   6.0  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    29   6.0  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   7.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.9  

>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 113 NTLEYILNCDRFRCSRQEC 57
           NT++  +NCD FRCS  EC
Sbjct: 149 NTIDTPMNCDHFRCSFNEC 167


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +1

Query: 757 PHXXPPXXPPXXPXXXPXPPLXQFPPXXPPXXS 855
           P   PP  PP  P   P PP    PP  PP  S
Sbjct: 53  PQFCPP--PPMCPPPPPPPPPPMCPPPPPPMPS 83


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 757 PHXXPPXXPPXXPXXXPXPPLXQFPPXXPP 846
           PH  PP  PP  P      P+    P  PP
Sbjct: 605 PHAVPPPPPPPPPQSFGMAPISSAAPPPPP 634


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 757 PHXXPPXXPPXXPXXXPXPPLXQFPPXXPP 846
           PH  PP  PP  P      P+    P  PP
Sbjct: 431 PHAVPPPPPPPPPQSFGMAPISSAAPPPPP 460


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 757 PHXXPPXXPPXXPXXXPXPPLXQFPPXXPP 846
           PH   P  P   P   P PP  Q P   PP
Sbjct: 143 PHFPGPPGPHRPPEHYPGPPRPQAPAAPPP 172


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 769 PPXXPPXXPXXXPXPPLXQFPPXXPPXXSS 858
           PP  P   P   P PP     P  PP  SS
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSS 293


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 757 PHXXPPXXPPXXPXXXPXPPLXQFPPXXPPXXSSXY 864
           P+   P  PP  P   P PP   +PP  PP   S Y
Sbjct: 127 PYQQQPPPPPPPPHYPPPPP--HYPP-PPPAPHSAY 159


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 769 PPXXPPXXPXXXPXPPLXQFPPXXPPXXSS 858
           PP  P   P   P PP     P  PP  SS
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSS 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,283,051
Number of Sequences: 27780
Number of extensions: 292264
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)