Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_O10
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    29   1.1  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   6.1  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   8.1  

>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = -2

Query: 562 PLSTQFCFEEIESKV*LKFTVEFSSC*YQAG 470
           P+  Q  F +IES   L FTVEF S  YQAG
Sbjct: 349 PVDAQTVFGDIESL--LTFTVEFHSRLYQAG 377


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 149 LVNVLASEPTQRTTK-AKIINFCISIVSFELQVTESK 42
           L N L++   +  TK AK++NFCI I  F + +  S+
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLFNVFLVWSR 99


>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
 Frame = -1

Query: 404  AHFAALVMSSVRRSEHLTLQSLPGLAPLLHQYRSLIWNNP*SFEPLRFVFVLDVSRL-LS 228
            A+   + ++ +R +    L +   +A  L  +  L++ N  +       F+LD      +
Sbjct: 828  AYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNL--CAHEFILDAREFKAT 885

Query: 227  CSTRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQRTTKAKIINFCISIVSFELQVTE 48
                 T    R         + + P + N L  EPT+  +  ++  FC +++S   ++ E
Sbjct: 886  AGVDATDIAKRLQDYSFHAPTLSWP-IANTLMIEPTESESMYEMDRFCDALISIRQEIRE 944


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,320
Number of Sequences: 5004
Number of extensions: 38834
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)