Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_O09
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.38 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 18/52 (34%), Positives = 19/52 (36%)
 Frame = +2

Query: 692  VXIPXXGVGPPXPXPWXCVAXNXPPXXPXPAPXPXXXPXFXPPXXXPXPVST 847
            V  P  G+ PP P P   V    PP    P P P       PP     PV T
Sbjct: 1171 VPAPSSGI-PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 28/117 (23%), Positives = 37/117 (31%), Gaps = 1/117 (0%)
 Frame = +2

Query: 509  KSTLKSEVAKPDXTIKIPXVSPLEAPSWRSPVSXPCPLTRIPVRPFLPFXKRWXFXHXXH 688
            KS+  +  A P        +  + APS   PV  P  +  +P +P +             
Sbjct: 1054 KSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP-KPSVA------------ 1100

Query: 689  AVXIPXXGVG-PPXPXPWXCVAXNXPPXXPXPAPXPXXXPXFXPPXXXPXPVSTRXG 856
            A  +P   V  PP P P        P     P P P   P    P     PV    G
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG 1157



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 26/91 (28%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
 Frame = +2

Query: 572  PLEAPSWRSPVSXPCPLTRIPVRPFLPFXKRWXFXHXXHAVXIPXXGVG-PPXPXPWXCV 748
            P+ APS   PV  P P    P  P  P            A  +P   V  PP P P    
Sbjct: 1084 PVPAPSGIPPV--PKPSVAAPPVP-KPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140

Query: 749  AXNXPPXXPXPAPXPXXXPXFXPPXXXPXPV 841
                P     P P P   P    P     PV
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 26/94 (27%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
 Frame = +2

Query: 572  PLEAPSWRSPVSXP---CPLTRIPVRPFLPFXKRWXFXHXXHAVXIPXXGVGPPXPXPWX 742
            P+ APS   PV  P    P    P     P  K            +P     PP P P  
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP-----AAGVPPVPPPSEAPPVPKPSV 1205

Query: 743  CVAXNXPPXXPXPAPXP-XXXPXFXPPXXXPXPV 841
             V    PP    P P P    P    P     PV
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +2

Query: 719 PPXPXPWXCVAXNXPPXXPXPAPXPXXXPXFXPPXXXPXPVSTRXGP 859
           PP P P   V    P   P P P P       PP   P P     GP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMG---GPPPPPPPPGVAGAGP 775



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 716 GPPXPXPWXCVAXNXPPXXPXPAP 787
           GPP P P   VA   PP  P P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +2

Query: 710 GVGPPXPXPWXCVAXNXPPXXPXPAPXPXXXPXFXP-PXXXPXP 838
           G  PP P P    A   PP  P PA        + P P   P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 761 PPXXPXPAPXPXXXPXFXPPXXXPXP 838
           PP  P P P P   P F PP   P P
Sbjct: 5   PPGNPPPPPPP---PGFEPPSQPPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,921
Number of Sequences: 5004
Number of extensions: 57906
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)