Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_O03
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.002
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.041
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.29 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.50 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   8.1  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   8.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    22   9.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = +2

Query: 776 PPAXXSPXPPPXPPSLXQXGXPPPPPXHXPPA 871
           PPA     PPP PP     G  PPPP   PPA
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 791 SPXPPPXPPSLXQXGXPPPPP 853
           +P P P PP     G PPPPP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 776 PPAXXSPXPPPXPPSLXQXGXPPPPP 853
           P    +P P P P  +     PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 776 PPAXXSPXPPPXPPSLXQXGXPPPPP 853
           PP   +P PPP PP       PPPPP
Sbjct: 5   PPG--NPPPPPPPPGFEPPSQPPPPP 28


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 776  PPAXXSPXPPPXPPSLXQXGXPPPPPXHXPPA 871
            PP   +P PPP P S+      PP P   P A
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSA 1730



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 776  PPAXXSPXPPPXPPSLXQXGXPPPPP 853
            PP    P PP  PP        PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 776 PPAXXSPXPPPXPPSLXQXGXPPPP 850
           PP   S  PPP P S    G  PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 776 PPAXXSPXPPPXPPSLXQXGXPPPPP 853
           PP+  S  PP   PSL     PP PP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPP 258



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 776 PPAXXSPXPPPXPPSLXQXGXPPPPPXHXPPA 871
           PP+     PP  PPSL   G P  PP   PP+
Sbjct: 424 PPSAPPSLPPSAPPSLPM-GAPAAPP--LPPS 452


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
 Frame = +2

Query: 776  PPAXXSPXPPPX---PPSLXQXGXPP-PPPXHXPP 868
            P A   P PPP    P      G PP PPP   PP
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +2

Query: 761  RTXXGP-PAXXSPXPPPXPPSLXQXGXPPPPPXHXPPA 871
            R   GP PA     PPP P S         PP   PP+
Sbjct: 956  RKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPS 993


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -3

Query: 487 KNIXLVHVDSGVACCFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKESDLVHHH 311
           K+  +++VD  +A CFV+  +  G    LE+ + +  +  + +  F +LG+   L+ HH
Sbjct: 538 KDNLILNVDGCIAVCFVDLLRNCGAF-TLEEANEYI-NLGILNGMF-VLGRSIGLIGHH 593


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 328 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEERQNLLLLF 170
           DL HH +  F GF VC+  ++  + + + D + L   ++ +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 791 SPXPPPXPPSLXQXGXPPPPP 853
           +P PPP PP+       P PP
Sbjct: 2   APAPPPPPPAPAPAAAAPAPP 22


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.2 bits (45), Expect(2) = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 839 PPPPPXHXPP 868
           PPPPP   PP
Sbjct: 239 PPPPPPTLPP 248



 Score = 21.4 bits (43), Expect(2) = 9.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 776 PPAXXSPXPPPXPPSL 823
           P     P PPP PP++
Sbjct: 184 PSDYNPPPPPPPPPAV 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,253
Number of Sequences: 5004
Number of extensions: 53064
Number of successful extensions: 284
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)