Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_O02
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0206 + 41990251-41992032,41992131-41992361 34 0.17
03_05_0439 + 24319464-24320102 30 2.1
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071... 30 2.7
02_02_0317 + 8893593-8894207 30 2.7
01_03_0237 + 14068713-14069315,14069654-14069914 29 3.6
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 4.8
08_01_1058 + 10765837-10766325 28 8.4
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 8.4
04_04_1179 - 31512592-31515126 28 8.4
03_05_0558 - 25606718-25606724,25606918-25606995,25608552-256086... 28 8.4
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105... 28 8.4
>01_07_0206 + 41990251-41992032,41992131-41992361
Length = 670
Score = 33.9 bits (74), Expect = 0.17
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +2
Query: 152 YWEDEEGYPVSGQFSKRHPRDVTWDKQVGG-----GKVFGTLGQNDDGLFGKAGYNREIF 316
Y D EG P+ S+R R W++Q+GG +++G D L +NR+
Sbjct: 216 YQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKD--LLTLYNFNRQYV 273
Query: 317 NDDRGKLTGQAYGTRVLGPAGGQYKLRWTSRL 412
N D+ L+ QA + + GQ+K W R+
Sbjct: 274 NMDKTWLSKQAEMSTL---QLGQWKPSWRHRI 302
>03_05_0439 + 24319464-24320102
Length = 212
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 354 APGSWDPQGDSTNYGGRLDWANKNAEAAIDINRQIGGRSGMTATGSGVWDL 506
AP +W P G GGR W A AA + GG +G G +W L
Sbjct: 56 APSAWSPGG-----GGRRQWRAAGAAAAKWLPFVAGGAAGRYPYGRPLWGL 101
>08_02_0975 +
23205590-23205733,23206813-23206894,23207017-23207127,
23207212-23208006,23208338-23208704,23209219-23209300,
23209477-23209532,23209888-23209942
Length = 563
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 279 GFLVKPVTTERSSM-MTAAN*PGRPTAPG--SWDPQGDSTNYGGRLDWANKNAEAAIDIN 449
GFLV + +++ N PG PT+PG S++ QG +T G + W+++ + +
Sbjct: 155 GFLVNGTGAMNKGLSVSSQNKPGAPTSPGTPSYNRQG-ATVVGYQQGWSSERVALSSNGQ 213
Query: 450 RQIGGRSGMTATGSG 494
R+ G S + +G
Sbjct: 214 RRHSGNSMVLPHNTG 228
>02_02_0317 + 8893593-8894207
Length = 204
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Frame = +3
Query: 348 PTAPGSW--DPQGDSTNYGG-------RLDWANKNAEAAIDINRQIGGRSGMTATGSGVW 500
P +P SW DP G++ G R D A+ A + GG + A G G W
Sbjct: 94 PHSPTSWRLDPVGEAGEESGSRWGRRWRPDPASDGRGAGEAWEVEAGGGREVEAAGGGTW 153
Query: 501 DLDKNTR-LSAGG 536
++ +N R + AGG
Sbjct: 154 EVRRNKREVEAGG 166
>01_03_0237 + 14068713-14069315,14069654-14069914
Length = 287
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +3
Query: 207 RVTSPGTNKWGEGRSSARWAKMMMGFLVKPVTTERSSMMTAAN*PGRPTAPGSWDPQGDS 386
R PGT + G + WA+ + ++ E + T + GR T+PG W
Sbjct: 166 RRLGPGTQRGGCRAEGSTWARGLASPGLQLKKRELEARRTESEKSGRDTSPGEWRSSSSR 225
Query: 387 TNYG 398
+ G
Sbjct: 226 LDLG 229
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 500 GS*QEHPPLSRRYGLEGIRSQKTRRRRPGRVP 595
GS Q + L RRYG + + T +++PG VP
Sbjct: 322 GSLQYYQRLGRRYGNKSLEVNATSQKKPGVVP 353
>08_01_1058 + 10765837-10766325
Length = 162
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 479 SNRLRSVGS*QEHPPLSRRY-GLEGIRSQKTRRRR-PGRVPS*LVIKKIP---SRHHR 637
SN RS+ S PP ++R L S + RRRR PG +V+ +P S+HHR
Sbjct: 18 SNAARSILSASAAPPPAKRAPSLPAAPSAQCRRRRPPGSAVIIVVLTALPSSSSQHHR 75
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 384 STNYGGRLDWANKNAEAAIDINRQI 458
S+ +GG L W N + E+ +D +RQ+
Sbjct: 960 SSLHGGSLPWKNTDFESTVDFDRQL 984
>04_04_1179 - 31512592-31515126
Length = 844
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 187 TANWISFFVLPINFCVDTH 131
TA+W +F VLP N+C+ H
Sbjct: 86 TASWYNFSVLPGNYCLRLH 104
>03_05_0558 -
25606718-25606724,25606918-25606995,25608552-25608665,
25608755-25609266
Length = 236
Score = 28.3 bits (60), Expect = 8.4
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -3
Query: 597 DGTLP-GRRRL-VFCDRIPSRPYRRLRGGCSCQDPTXXXXXXSFQICLRSVYLYQ*QLPH 424
DG P G +RL VF D P R L G C+C D Q+C R + + +
Sbjct: 127 DGERPFGSQRLRVFIDSAPGR----LIGICACNDEKLGHSGYLLQLCGR-LGVLDGNWEY 181
Query: 423 FYWPSLDVHRSLYC 382
Y LDV + YC
Sbjct: 182 NYVALLDVPKQNYC 195
>02_01_0148 -
1051121-1051192,1051378-1051512,1052343-1052396,
1052501-1052581,1052667-1052826,1053346-1053453,
1053543-1053718,1053952-1054002,1054154-1054264,
1054493-1054547,1055667-1055789,1055922-1056007,
1056235-1056349,1056429-1056667
Length = 521
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 184 ANWISFFVLPINFCVDTHQDRGEEI 110
A W F LP + +D H DR E++
Sbjct: 69 ALWAHFHRLPARYALDVHADRAEDV 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,556,609
Number of Sequences: 37544
Number of extensions: 518740
Number of successful extensions: 1452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -