Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_O01
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.095
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.53 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.63 
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.6  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   6.6  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   6.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   8.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 697  PXPPGXKXPXSPTPTXAXXPXXPPPXXPXAPPP 795
            P PP  + P  P P+    P  PP   P  P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222



 Score = 27.1 bits (57), Expect(2) = 0.095
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 697  PXPPGXKXPXSPTPTXAXXPXXPPPXXPXAPPPPS 801
            P PP    P  PTP+ A  P  P P    APP P+
Sbjct: 1209 PVPPPSTAPPVPTPS-AGLPPVPVP-TAKAPPVPA 1241



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +1

Query: 697  PXP-PGXKXPXSPTPTXAXXPXXPPPXXPXAPPP 795
            P P P    P  P P     P  PP   P  P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203



 Score = 23.8 bits (49), Expect(2) = 0.095
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 487  PPARPPPXXLXVPWXSPPXXXPSIXXXEPPPP 582
            P A  PP  +  P  +PP   PS+     PPP
Sbjct: 1184 PAAGVPP--VPPPSEAPPVPKPSVGVPPVPPP 1213


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 691 LXPXPPGXKXPXSPTPTXAXXPXXPPPXXPXAPPPP 798
           L   PP       PTP  A  P  PP      PPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 487 PPARPPPXXLXVPWXSP-PXXXPSIXXXEPPPP 582
           PP  PP   +  P  +P P   P+     PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 697 PXPPGXKXPXSPTPTXAXXPXXPPPXXPXAPPPPS 801
           P PP  +    P  +    P  PPP    APP PS
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPS 162



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +1

Query: 697 PXPPGXKXPXSPTPTXAXXPXXPPPXXPXAPPPP 798
           P P     P    P+    P   PP  P  PPPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 487 PPARPPPXXLXVPWXSPPXXXPSIXXXEPPPP 582
           P + PPP     P  SPP   PS+    PP P
Sbjct: 168 PSSLPPPAQPAAPVKSPP-SAPSLPSAVPPMP 198


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = +1

Query: 691 LXPXPPGXKXPXSPTPTXAXXPXXPP--PXXPXAPPPPS 801
           L P  P    P +P       P  PP  P  P APP P+
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPA 461



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 502 PPXXLXVPWXSPPXXXPSIXXXEPPP 579
           PP    +P   PP   PS+    PPP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPP 255



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 22/103 (21%), Positives = 24/103 (23%)
 Frame = +1

Query: 487 PPARPPPXXLXVPWXSPPXXXPSIXXXEPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 666
           PP  PPP        S P          PPPP                            
Sbjct: 337 PPPPPPPRSNAA--GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394

Query: 667 XXXXXXTXLXPXPPGXKXPXSPTPTXAXXPXXPPPXXPXAPPP 795
                   L P     +    P PT    P   PP  P + PP
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437



 Score = 25.4 bits (53), Expect(2) = 0.63
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +1

Query: 697 PXPPGXKXPXSPTPTXAXXPXXPP--PXXPXAPPPPS 801
           P PP    P +P P  A  P  PP  P  P  PP P+
Sbjct: 448 PLPPSA--PIAP-PLPAGMPAAPPLPPAAPAPPPAPA 481



 Score = 22.6 bits (46), Expect(2) = 0.63
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 487 PPARPPPXXLXVPWXSPPXXXPSIXXXEPPPP 582
           PP+ PP     +P  +PP          P PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 831 PPXXXPPHNXXXSXXPXLXPPXPPXSPPP 917
           PP   PPHN   +  P L  P P  S  P
Sbjct: 503 PPFELPPHNYSQAQSPNLATPSPSFSSLP 531


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 697  PXPPGXKXPXSPTPTXAXXPXXPPPXXPXAPPP 795
            P P     P S  P  A  P  PPP  P +  P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 721  PXSPTPTXAXXPXXPPPXXPXAPPPPS 801
            P S  P     P  PPP     PPPPS
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMS-VPPPPS 1719



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
 Frame = +1

Query: 703  PPGXKXPXSPTPTXAXXPXXPPPXXPXAP---PPPSL 804
            PP    P  P P  +  P    P  P  P   PPP L
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 697  PXPPGXKXPXSPTPTXAXXPXXPPPXXPXAPPPP 798
            P PP       P P+    P  P    P APPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGP----PSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 703 PPGXKXPXSPTPTXAXXPXXPPPXXPXAPPPP 798
           PPG   P  P P         PP  P  PPPP
Sbjct: 5   PPGNPPPPPPPP------GFEPPSQPPPPPPP 30


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 703 PPGXKXPXSPTPTXAXXPXXPPPXXPXAPPPPSL 804
           PP  + P +  P  +      PP  P  PPPP++
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPP--PPPPAV 199


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 123 LCWLWPTLKETATNLLTTARTSL-ILPKTTTLMETATNLSTTVHITWTV 266
           LCW+WP  K    N L    + L ILP T    +   N +      W +
Sbjct: 361 LCWIWP--KNRVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASPWWVI 407


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 158 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGPTLLQAY 295
           +E +D  PY++N P+     G   E     A    R QGP+LL+ Y
Sbjct: 734 HEIVDEEPYLLNDPEKELELGCTLE----SALKRARAQGPSLLEDY 775


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +1

Query: 697 PXPPGXKXPXSPTPTXAXXPXXPPPXXPXAPPPPSLXXXT 816
           P P G   P  PTP  +  P       P   P PS+   T
Sbjct: 242 PTPFGSGGPSKPTPFESHGPAKQISVQPSEHPKPSISTTT 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,977
Number of Sequences: 5004
Number of extensions: 44194
Number of successful extensions: 251
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)