Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_N23
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical pr... 140 2e-33
AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical... 140 2e-33
Z70311-11|CAA94380.1| 484|Caenorhabditis elegans Hypothetical p... 43 3e-04
Z70306-6|CAA94326.1| 484|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical pr... 32 0.62
Z99281-40|CAB16512.1| 268|Caenorhabditis elegans Hypothetical p... 31 1.4
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 30 2.5
U41275-3|AAA82466.1| 612|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical pr... 29 5.8
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 29 5.8
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 29 5.8
AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical... 29 5.8
>Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 140 bits (338), Expect = 2e-33
Identities = 85/228 (37%), Positives = 117/228 (51%), Gaps = 1/228 (0%)
Frame = +1
Query: 193 FLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSIL 372
F+GLGNMGG MA NL+K G + YD +K + G A ++L
Sbjct: 6 FIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVL 65
Query: 373 TSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGV 552
S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP+SGGV
Sbjct: 66 PSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGV 125
Query: 553 MGAQNATLAFMXG-GRKEDFERSLPLLKVMGAKQFHCGQIGSXQVAKLTNNMLMGITGMA 729
GAQ ATL FM G G F+R+ +L +MG + G +G+ AK+ NNML+GI +A
Sbjct: 126 TGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVA 185
Query: 730 TAECMNMGIKMGTPXXRFCWTC*TTHRLPPGSTEVYCPXPGLVXTXPS 873
AE MN+GI MG T S++ Y P PG++ PS
Sbjct: 186 VAETMNLGISMGLDAKALAGIV-NTSSGRCWSSDTYNPVPGVIENIPS 232
>AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 140 bits (338), Expect = 2e-33
Identities = 85/228 (37%), Positives = 117/228 (51%), Gaps = 1/228 (0%)
Frame = +1
Query: 193 FLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSIL 372
F+GLGNMGG MA NL+K G + YD +K + G A ++L
Sbjct: 6 FIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVL 65
Query: 373 TSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGV 552
S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP+SGGV
Sbjct: 66 PSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGV 125
Query: 553 MGAQNATLAFMXG-GRKEDFERSLPLLKVMGAKQFHCGQIGSXQVAKLTNNMLMGITGMA 729
GAQ ATL FM G G F+R+ +L +MG + G +G+ AK+ NNML+GI +A
Sbjct: 126 TGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVA 185
Query: 730 TAECMNMGIKMGTPXXRFCWTC*TTHRLPPGSTEVYCPXPGLVXTXPS 873
AE MN+GI MG T S++ Y P PG++ PS
Sbjct: 186 VAETMNLGISMGLDAKALAGIV-NTSSGRCWSSDTYNPVPGVIENIPS 232
>Z70311-11|CAA94380.1| 484|Caenorhabditis elegans Hypothetical
protein T25B9.9 protein.
Length = 484
Score = 43.2 bits (97), Expect = 3e-04
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 11/186 (5%)
Frame = +1
Query: 178 DKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPS----KDAL-NAAAKNGVTPANSIXXXX 342
+ ++A +GL MG + N+ GFTV ++ + D L N A + A+SI
Sbjct: 3 EADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFLANEAKGTKIIGAHSIEEMC 62
Query: 343 XXXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLG 522
++ K V + D +V H ++G ++ID + + KG+
Sbjct: 63 KKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGIM 122
Query: 523 FTDAPVSGGVMGAQNATLAFMXGGRKEDFERSLPLLKVMGAKQ--FHC----GQIGSXQV 684
F VSGG GA+ + M GG + + + + + AK C G GS
Sbjct: 123 FVGCGVSGGEEGARFGP-SLMPGGNPKAWPHLKDIFQKIAAKSNGEPCCDWVGNAGSGHF 181
Query: 685 AKLTNN 702
K+ +N
Sbjct: 182 VKMVHN 187
>Z70306-6|CAA94326.1| 484|Caenorhabditis elegans Hypothetical
protein T25B9.9 protein.
Length = 484
Score = 43.2 bits (97), Expect = 3e-04
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 11/186 (5%)
Frame = +1
Query: 178 DKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPS----KDAL-NAAAKNGVTPANSIXXXX 342
+ ++A +GL MG + N+ GFTV ++ + D L N A + A+SI
Sbjct: 3 EADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFLANEAKGTKIIGAHSIEEMC 62
Query: 343 XXXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLG 522
++ K V + D +V H ++G ++ID + + KG+
Sbjct: 63 KKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGIM 122
Query: 523 FTDAPVSGGVMGAQNATLAFMXGGRKEDFERSLPLLKVMGAKQ--FHC----GQIGSXQV 684
F VSGG GA+ + M GG + + + + + AK C G GS
Sbjct: 123 FVGCGVSGGEEGARFGP-SLMPGGNPKAWPHLKDIFQKIAAKSNGEPCCDWVGNAGSGHF 181
Query: 685 AKLTNN 702
K+ +N
Sbjct: 182 VKMVHN 187
>Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical
protein C31C9.2 protein.
Length = 322
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 181 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 306
+ +A LGLG +G +A L G V G+DP A AKN
Sbjct: 146 RTLAVLGLGRIGSEVAVRLQAFGMKVIGFDPMVTKEQAEAKN 187
>Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical
protein F54C8.1 protein.
Length = 298
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 181 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAK 303
+NVA +G G MG +A GF V D +K AL+ A K
Sbjct: 12 RNVAIVGSGQMGSGIAQVTASSGFNVMLADVNKKALDRAMK 52
>Z99281-40|CAB16512.1| 268|Caenorhabditis elegans Hypothetical
protein Y57G11C.11a protein.
Length = 268
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 202 LGNMGGFMAANLVKKGFTVRGYDPSKDALNAA 297
+G+ GG ++ L + GF V G D +K A+ AA
Sbjct: 82 VGSGGGLLSIPLARSGFDVTGIDATKQAVEAA 113
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 514 LSLRL*GRSVWEHSDLSYSNRSEAILFSHEPQRHLCPGTRRARL 383
LS R +W ++++ SEA+++ H PQ + PGT A +
Sbjct: 1453 LSNRWNNEKIWLQK-VNFTRNSEAVMWLHSPQHAVVPGTPIAEI 1495
>U41275-3|AAA82466.1| 612|Caenorhabditis elegans Hypothetical
protein T25D1.1 protein.
Length = 612
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 131 LSVCTQPPDGRIVLTPTRMWLSSAS-ETWED 220
+ VC PP TPTR+ L SAS + W+D
Sbjct: 544 ICVCNLPPRCLRTCTPTRLQLPSASNDVWDD 574
>Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical
protein T21B10.4 protein.
Length = 418
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -2
Query: 609 EVFFTTSXHEGQGSVLSTHDSSRYRCICESQPFL*GYREDLFGNIRIYRTRIDQKRSFFR 430
E FF + H ++S H RY S F ++ED + Y+ RID + F
Sbjct: 168 EQFFVSGLHTDNFKLISLH---RYYRSSPSSRF--EWQEDQYAGKFYYKERIDDQIQLFE 222
Query: 429 MSHNAIFA 406
+ NA+ A
Sbjct: 223 IPMNALVA 230
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 544 GGVMGAQNATLAFMXGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSXQVAKLTNNMLMGI 717
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 718 TGMAT 732
AT
Sbjct: 325 PQCAT 329
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 544 GGVMGAQNATLAFMXGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSXQVAKLTNNMLMGI 717
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 718 TGMAT 732
AT
Sbjct: 325 PQCAT 329
>AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical
protein Y71H2AM.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 713 PINMLLVSLATCXEPICPQWNCLAPITLRRGRDLSKSSLRPP 588
P N LL+ A+ CP+ NC ITL RD +++R P
Sbjct: 103 PCNCLLICKASSTRIACPRNNCRRVITLAGQRD-PGTAIRAP 143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,299,710
Number of Sequences: 27780
Number of extensions: 477376
Number of successful extensions: 1244
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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