Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N21
         (999 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.50 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   0.62 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   9.0  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect(2) = 0.50
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 163 PXXXXPPPXXPXPPXPPPP 219
           P    P    P PP PPPP
Sbjct: 179 PATSLPSDYNPPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 847 PPXPPPPXP 873
           PP PPPP P
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 0.50
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 307 PXPPPPPXP 333
           P PPPPP P
Sbjct: 236 PAPPPPPPP 244



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 850 PXPPPPXPP 876
           P PPPP PP
Sbjct: 236 PAPPPPPPP 244


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +3

Query: 702 PPPPPPPXXXP--XPPP 746
           PPPPPPP   P   PPP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
 Frame = +3

Query: 177 PPPPX---PXXPPPPPP 218
           PPPP    P  PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
 Frame = +3

Query: 702 PPPPP---PPXXXPXPPP 746
           PPPPP   PP   P PPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect(2) = 0.62
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 151 PXXFPXXXXPPPXXPXPPXPPPP 219
           P   P    PPP    P  PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 5/20 (25%)
 Frame = +3

Query: 702 PPPPPP-----PXXXPXPPP 746
           PPPPPP     P   P PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 21.8 bits (44), Expect(2) = 0.62
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 295 PHXXPXPPPPP 327
           P   P PPPPP
Sbjct: 20  PPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 702 PPPPPPPXXXPXPPPXXXXXP 764
           PPPPPP    P P P     P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP 752



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
 Frame = +3

Query: 177 PPPPX-----PXXPPPPPPA 221
           PPPP      P  PPPPPPA
Sbjct: 765 PPPPGVAGAGPPPPPPPPPA 784



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
 Frame = +3

Query: 702 PPPPPPP---XXXPXPPP 746
           PPPPPPP      P PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 702 PPPPPPPXXXPXPPPXXXXXP 764
           PPPPPP      PPP     P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 177 PPPPXPXXPPPPPP 218
           PP P    PPPPPP
Sbjct: 753 PPAPIMGGPPPPPP 766



 Score = 23.8 bits (49), Expect(2) = 3.8
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 142 TNXPXXFPXXXXPPPXXPXPPXPPPP 219
           T  P   P     P     PP PPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 23.4 bits (48), Expect(2) = 4.9
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
 Frame = +1

Query: 151 PXXFPXXXXPPPXXPX---PPXPPPP 219
           P   P     PP  P    PP PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 21.4 bits (43), Expect(2) = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 313 PPPPPXPXXA 342
           PPPPP P  A
Sbjct: 762 PPPPPPPGVA 771



 Score = 21.4 bits (43), Expect(2) = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 313 PPPPPXPXXA 342
           PPPPP P  A
Sbjct: 775 PPPPPPPPPA 784


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 702  PPPPPPPXXXPXPP 743
            P PPPPP   P PP
Sbjct: 1705 PTPPPPPMSVPPPP 1718



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 150  PXXXSXXXXPPPPXPXXPPPPPP 218
            P   S    PPPP    PPP  P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAP 1721



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 180  PPPXPXXPPPPPPA 221
            PPP P   PPPP A
Sbjct: 1707 PPPPPMSVPPPPSA 1720


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect(2) = 9.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 308 PPXPPPPXP 334
           PP PPPP P
Sbjct: 306 PPPPPPPPP 314



 Score = 21.0 bits (42), Expect(2) = 9.0
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +2

Query: 104 NLTIIXPQKXKXXPTXXGXFPXXXPPPP 187
           NL+    Q      +  G  P   PPPP
Sbjct: 286 NLSASKTQAPSSGDSANGGLPPPPPPPP 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.154    0.585 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,514,818
Number of Sequences: 5004
Number of extensions: 23651
Number of successful extensions: 364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)