Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N21
         (999 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.81 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   10.0 

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.81
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 183 PPXPXXPPPPP 215
           PP P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 847 PPXPPPPXPP 876
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 959 PPXPAPXXXPPPP 997
           PP PAP   PPPP
Sbjct: 338 PPKPAP--PPPPP 348



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 702 PPPPPPPXXXP 734
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 702  PPPPPPP 722
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 702  PPPPPPP 722
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +3

Query: 123 PKKXKXXQXPXXXSXXXXPPPPXPXXPPPPPPA 221
           P   +  Q P   S       P P  PP  PP+
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 295 PHXXPXPPPPPXP 333
           PH  P PP  P P
Sbjct: 463 PHHHPHPPETPGP 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.154    0.585 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,326
Number of Sequences: 438
Number of extensions: 6830
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33137286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)