Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N20
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   3.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   5.9  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   7.8  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   7.8  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 122 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 217
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 327 LSPSTRPSFIMLGNFNDSSFIMLSKCCISL--AKVGPKR 217
           LSPSTR   + +  F D   ++L K    +   KV P+R
Sbjct: 582 LSPSTRGIILCISGFTDKLHVLLEKVVAMMRDLKVHPQR 620


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 242  EMQHLDNMMKELSLKFPSIINEGRV 316
            E+++L NM+ EL  KFP +   GR+
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/84 (19%), Positives = 34/84 (40%)
 Frame = +1

Query: 19  HYREFLRFEYTLRVVERSTRMIALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRE 198
           H +  ++ +  L +   +++   L L  L    +A P Y +  +  P+HH++ +  +   
Sbjct: 208 HDKVNMKEKRNLELAFMNSKRKKLELPSLPVLSTAGPSYTNSLALPPFHHHNNYKMFNTT 267

Query: 199 SMLDTHSLWSNLGQRNATLGQHDE 270
             L+        G  N  +   DE
Sbjct: 268 HTLEDDKFLQGKGTSNNPISLSDE 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,467
Number of Sequences: 5004
Number of extensions: 50722
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)