Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N20
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0515 + 14930736-14932697                                         32   0.51 
03_02_0037 - 5192935-5192970,5193057-5193140,5193261-5193371,519...    31   0.89 
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    30   2.7  
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    29   3.6  
04_04_0347 + 24564589-24565296                                         29   3.6  

>05_03_0515 + 14930736-14932697
          Length = 653

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 82  IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSN-LGQRN 246
           + L +C +   V  +P  +    +W YH     + YV +S+  ++ S WSN LGQ N
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYN 364


>03_02_0037 -
           5192935-5192970,5193057-5193140,5193261-5193371,
           5193460-5193834
          Length = 201

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +1

Query: 109 AAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLGQRNATLGQHDEGAVVEV 288
           ++ S     +HG +  PY+H D +S    E  L   S  S+ G R      +D+GA    
Sbjct: 24  SSYSCGTARFHGKAQQPYYHCD-YSEDAEEDDLSMISDASS-GPRQQCSTGNDDGAAAAA 81

Query: 289 PQHYKRRTRGRR 324
                 R RGRR
Sbjct: 82  AHANAARRRGRR 93


>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 284 KFPSIINEGRVEGDKYXISIHLPXYEQKDINVK 382
           K   ++ E +VEGD Y + +H P +  K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248


>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 296 IINEGRVEGDKYXISIHLPXYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 454
           I ++G++EG +  I  H+P  E  D+ V + +   +   +S   H  K  N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 79  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 180
           M  L+   LLAA SAA   +H  ++ PY HH+ P+
Sbjct: 5   MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,935,790
Number of Sequences: 37544
Number of extensions: 363599
Number of successful extensions: 989
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)