Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N19
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.13 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.92 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.92 

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 20/55 (36%), Positives = 20/55 (36%)
 Frame = -1

Query: 473 GGGXXXXXXVPXGXGGXXXXGGEXXXPPXGRAXXXXAGXGGGXGXXXGXXGGXXG 309
           GGG       P G GG    GGE      G       G GGG G   G  GG  G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGE------GHHHGGHGGFGGGPGGFEGGPGGFGG 242


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +1

Query: 319 PPXXPXXXPHPPPXPAXXXXALPXGGXXXSPPXXXXPPXPXGTXXXXXXPPPP 477
           PP      P P P P       P  G    PP    PP   G       PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMG---GPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +1

Query: 298 GXXXPXXPPXXPXXXPHPPPXPAXXXXALPXGGXXXSPPXXXXPPXP 438
           G   P  PP      P PPP P     A+  GG     P     P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPP---PPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +1

Query: 310 PXXPPXXPXXXPHPPPXPAXXXXALP-XGGXXXSPPXXXXPPXP 438
           P  PP  P   P  PP P     A P   G   +PP     P P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +1

Query: 343 PHPPPXPAXXXXALPXGGXXXSPPXXXXPPXPXGTXXXXXXPPPP 477
           P PPP P+      P  G   S      PP P  +      P PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 15/55 (27%), Positives = 16/55 (29%)
 Frame = +1

Query: 310  PXXPPXXPXXXPHPPPXPAXXXXALPXGGXXXSPPXXXXPPXPXGTXXXXXXPPP 474
            P  P       P P P         P  G    PP    PP P  +      PPP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/55 (29%), Positives = 17/55 (30%)
 Frame = +1

Query: 310  PXXPPXXPXXXPHPPPXPAXXXXALPXGGXXXSPPXXXXPPXPXGTXXXXXXPPP 474
            P  P       P PPP  A      P  G    PP    PP P  +      P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPK-PSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 830,657
Number of Sequences: 5004
Number of extensions: 6603
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)