Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N15
         (918 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    34   0.18 
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    31   1.3  
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797     29   5.2  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    29   5.2  
05_03_0618 - 16262826-16263097,16263111-16263183                       28   9.0  
03_02_0950 + 12661008-12662312,12662403-12662576                       28   9.0  

>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
 Frame = +2

Query: 176 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 346
           +LY+ +++   G Y+ A+   S     + G  +KE  K L+E+    T++   +L T DG
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCT-DG 549

Query: 347 KEIVKSYFPIQFXVIFTXQTVKLINXRDHHALKXIDQQNHXKIAFGDSPXQNQ-QXXLLE 523
            + +         ++     +  +N   H     ++   +   A  DSP Q +    LLE
Sbjct: 550 GDPMTRRGSNSMHLLMIPSPMDFVNIFVHSPKHLMEFLENYTKAVKDSPAQTEIHNTLLE 609

Query: 524 VY 529
           +Y
Sbjct: 610 LY 611


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 23/69 (33%), Positives = 28/69 (40%)
 Frame = +1

Query: 490 PXTKPAXXSPGSLPPVXENTEFTSXSCPPRTTVPEAXYTKPF**XPXHPTGDSPX*HLQP 669
           P  KP   SP S  P+ ENT     +    TT+P   + +P    P  PT      H  P
Sbjct: 373 PRRKPPSPSPPS-SPLIENTSALRSTTTTDTTIPRNPFVQP----PPPPTHT----HGPP 423

Query: 670 PLXPXXPXP 696
           P  P  P P
Sbjct: 424 PPPPPPPPP 432


>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
          Length = 216

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = +1

Query: 427 GPSRPQVDRPTKPXQNCIR*LPXTKPAXXSPGSLPPVXENTEFTSXSCPPRTTVP 591
           GPS P       P   C+   P TKPA  +P  LPP   +   +  S  P    P
Sbjct: 40  GPSTPVAADDVPPPPYCVYPPPPTKPALPAP--LPPTPASPGDSPPSIAPAGNPP 92


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
 Frame = -3

Query: 325 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 179
           V E  G+P+AV D  +    D +  +FL+        G           L   N D+ I 
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764

Query: 178 LLRQYVISSWCKCGVRSQRTHGEDEGK 98
            L +   +  C+  V S R HG  +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 157 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 71
           S  C+CG+RS+R    +E +  +  LG V
Sbjct: 24  SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52


>03_02_0950 + 12661008-12662312,12662403-12662576
          Length = 492

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 161 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 262
           +VL+ +      +GEY+ AIA CS+ L++ K  V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,612,734
Number of Sequences: 37544
Number of extensions: 368634
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)