Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N14
         (1008 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.010
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.054
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    27   0.35 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect(2) = 0.010
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 818 PPXPPPPPPP 847
           PP P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 24.6 bits (51), Expect(2) = 0.010
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 821 PXPPPPPPPXXXP 859
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 857 PXXXPPPPPPPXXAP 901
           P   PPPPPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 743 PPPPXXXXAXPPPPPXGGG 687
           PP P    A PPPPP   G
Sbjct: 338 PPKP----APPPPPPSSSG 352



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 921 PPTPXXPPPP 950
           PP P  PPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 857 PXXXPPPPPPP 889
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 925  QPPXXPPPPXXGXVF 969
            QPP  PPPP  G  +
Sbjct: 1354 QPPPPPPPPSSGQAY 1368



 Score = 23.8 bits (49), Expect(2) = 0.054
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 827  PPPPPPP 847
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 869  PPPPPPP 889
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 827  PPPPPPP 847
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect(2) = 0.054
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 869  PPPPPPP 889
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 818  PPXPPPPP 841
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 822  PPPPPXPP 845
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 900 GAXXGGGGGGGXXXGXXXGGGGGG 829
           G    G  GG    G   GGGGGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGG 51



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = -3

Query: 928 VGGXXKXXXGGXXGGGGGXGXXXXXXXGGGXGGGG 824
           +GG      GG   G  G         GGG GG G
Sbjct: 19  LGGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 714 PPPPPXXGG 688
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
 Frame = +3

Query: 870 PXPPPPPXXPPXLXXXX-PPTPXXPPPP 950
           P P P P   P       PP P   PPP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 818 PPXPPPPPPPXXXPXXXPPPPP 883
           PP P   PPP   P   P   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +2

Query: 821 PXPPPPPPPXXXPXXXPPPPPPPXXAP 901
           P    PP P   P    PP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +2

Query: 818 PPXPPPPPPPXXXPXXXPPPPPP 886
           P    PP P    P   PP  PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
 Frame = +3

Query: 822 PPPPPXPPPXXXXXXXPXPP---PPPXXPP 902
           P P P   P       P  P   PPP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 821  PXPPPPPP 844
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 21.0 bits (42), Expect(2) = 2.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 869  PPPPPP 886
            PPPPPP
Sbjct: 1859 PPPPPP 1864



 Score = 20.6 bits (41), Expect(2) = 2.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 827  PPPPPPP 847
            P PPPPP
Sbjct: 1857 PEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 291,698
Number of Sequences: 438
Number of extensions: 11506
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33500103
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)