Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N13
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.23 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.40 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 584  TSXXPXXPPPPPPPP 628
            T+     PPPPPPPP
Sbjct: 1348 TAWRQQQPPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 607  PPXPPPPP 630
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 865  PPPPPXPP 888
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 868  PPPPXPPP 891
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +1

Query: 520 FRLLYSIFNVKLMSEFHXNNYXIXXPXXPP-PXPPPPPXXXXXP 648
           F  + ++F    + E+   N  +     PP P PPPPP     P
Sbjct: 310 FMSVCTVFVFMALMEYCLVNIVLGDSDTPPKPAPPPPPPSSSGP 353



 Score = 26.2 bits (55), Expect = 0.40
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 587 SXXPXXPPPPPPPP 628
           S  P  P PPPPPP
Sbjct: 335 SDTPPKPAPPPPPP 348



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 542 SMLN*CLNFIXTITTSXXPXXPPPPPPP 625
           +++  CL  I    +   P   PPPPPP
Sbjct: 321 ALMEYCLVNIVLGDSDTPPKPAPPPPPP 348



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 603 PPPXPPPPPXXXPXP 647
           P P PPPPP     P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 606 PPXPPPPPXXXPXPGAXXPPLVRVNGI 686
           PP P PPP   P P +  P   +++ I
Sbjct: 338 PPKPAPPP---PPPSSSGPDSAKLDKI 361



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 607 PPXPPPPPXXXXXPGP 654
           PP P PPP      GP
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 853 PPXXPPPPPXP 885
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 856 PXXPPPPPXPP 888
           P  P PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 605  PPPPPPPP 628
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 578  ITTSXXPXXPPPPP 619
            I  S  P  PPPPP
Sbjct: 1851 IPVSGSPEPPPPPP 1864


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -1

Query: 294 RKKYFFDSFLEWDGVIFGFFLPQKPLIKTSTYYKIFTLYN 175
           RKK     + ++ G+++   LP    I +  Y +  T  N
Sbjct: 185 RKKVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLN 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,685
Number of Sequences: 438
Number of extensions: 8380
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)