Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N12
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    99   7e-22
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.010
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.055
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.072
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.38 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   2.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.3  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   8.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 99.1 bits (236), Expect = 7e-22
 Identities = 56/149 (37%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
 Frame = +1

Query: 58  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 231
           I+STN KDI  LY                    EL  PGS  L G+ Q+YN  ++AH   
Sbjct: 12  IFSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGIL 71

Query: 232 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 411
                          N LVPL++GAPD+A+PR+NN  F              + E G G 
Sbjct: 72  MIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGG 131

Query: 412 G*TVYPPLSSNIAHRGRSVDLAIFSLHFS 498
           G TVYPPLSS  +H G ++DLAI SL  +
Sbjct: 132 GWTVYPPLSSITSHSGPAIDLAILSLQLT 160


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +2

Query: 743 PPXPXXXPPXXXXPPP-PAXXGXXPPPPXXLXPPXPXXXXXXXXAAXPPPP 892
           PP P   PP    P P PA     PP P    PP P        A  PPPP
Sbjct: 732 PPPP---PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 33.1 bits (72), Expect = 0.055
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 781 PPPPRGXXGXPXPPPXPXPP 840
           PPPP G  G   PPP P PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 32.3 bits (70), Expect = 0.095
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = +2

Query: 743 PPXPXXXPPXXXXPPPPAXXGXXPPPPXXLXPPXP 847
           PP P    P    PPPP   G  PPPP    PP P
Sbjct: 753 PPAPIMGGPPPP-PPPPGVAGAGPPPP---PPPPP 783



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +1

Query: 772 LXXPPPPRGXXGXPXPPPXPXPPXXXXXXXPXXXGXPPPP 891
           L  PPPP      P P P P P        P   G PPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIP---VPPPAPIMGGPPPPP 765



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +1

Query: 751 PXXXPPXLXXPPPPRGXXGXPXPPPXPXPPXXXXXXXPXXXGXPPPP 891
           P   P  +  PPP     G P PPP   PP       P     PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP---PPGVAGAGPPPP--PPPPP 783



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 745 PXPXXXPPXLXXPPPPRGXXGXPXPPPXP 831
           P P    P    PPP     G P PPP P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 743  PPXPXXXPPXXXXPPPPAXXGXXPPPP 823
            PP P   PP    PP PA     PPPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 32.3 bits (70), Expect = 0.095
 Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
 Frame = +2

Query: 728  FXXXXPPXPXXXPPXXXXP--PPPAXXGXXPPPPXXLXPPXPXXXXXXXXAAXPPPP 892
            F    P  P   PP       PP       PPPP  + PP           + PPPP
Sbjct: 1678 FGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 751  PXXXPPXLXXPPPPRGXXGXPXPPPXPXPP 840
            P   PP +  PPPP        PP  P PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
 Frame = +1

Query: 745  PXPXXXPPX---LXXPPPPRGXXGXPXPPPXPXPPXXXXXXXPXXXGXPPPP 891
            P P   PP       PP P+   G P  PP    P       P   G PP P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 743  PPXPXXXPPXXXXPPPPAXXGXXPPPPXXLXPPXP 847
            PP P   PP    P P    G  P PP    PP P
Sbjct: 1189 PPVP---PPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +2

Query: 743  PPXPXXXPPXXXXPPPPAXXGXXP-PPPXXLXPPXP 847
            PP P    P    PP PA  G  P P P    PP P
Sbjct: 1102 PPVPK---PSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +2

Query: 743  PPXPXXXPPXXXXPPPPAXXGXXP-PPPXXLXPPXP 847
            PP P    P    PP PA  G  P P P    PP P
Sbjct: 1140 PPVPK---PSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 763 PPXLXXPPPPRGXXGXPXPPPXPXPP 840
           PP    PPPP      P  PP P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 743 PPXPXXXPPXXXXPPPP 793
           PP P   PP    PPPP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
 Frame = +2

Query: 743 PPXPXXXPPXXXXPPPP---AXXGXXPPPPXXLXP----PXPXXXXXXXXAAXPPP 889
           PP P    P    PPPP         PPPP    P    P P           PPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
 Frame = +2

Query: 743 PPXPXXXPPXXXXPPPP---AXXGXXPPPPXXLXP----PXPXXXXXXXXAAXPPP 889
           PP P    P    PPPP         PPPP    P    P P           PPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
 Frame = +2

Query: 743 PPXPXXXPPXXXXPPPPA--XXGXXPPPP 823
           PP P    P    PPPP     G   PPP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +2

Query: 743 PPXPXXXPPXXXXPPPPAXXGXXPPPPXXLXPPXPXXXXXXXXAAXPPP 889
           PP P   PP     PPPA        P    P  P           PPP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPS-APSLPSAVPPMPPKVPPPP 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +1

Query: 751 PXXXPPXLXXPPPPRGXXGXPXPPPXPXPPXXXXXXXPXXXGXPPPP 891
           P   PP L    PP    G P  PP P                PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
 Frame = +1

Query: 745 PXPXXXPPXLXXPP-PPRGXXGXPXPPPXPXPPXXXXXXXPXXXGXPPP 888
           P P    P    P  PP G       PP P PP       P      PP
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/53 (28%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
 Frame = +2

Query: 743 PPXPXXXPPXXXXPPPPAXXGXXPPPPXXLXPP---XPXXXXXXXXAAXPPPP 892
           PP P         P PP      PPPP    P     P         + PP P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 839 GGXGXGGGXGXPXXPRGGGGXXRXGG 762
           GG G G G G P  P G GG    GG
Sbjct: 191 GGFGGGSG-GPPPGPGGFGGFGGFGG 215


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 782 PPPPAXXGXXPPPP 823
           PPPPA  G   PPP
Sbjct: 129 PPPPAGFGRGAPPP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,971
Number of Sequences: 5004
Number of extensions: 44196
Number of successful extensions: 268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)