Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N10
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.39 
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    28   1.6  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    28   2.1  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   6.3  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 371 VDLEGLLVIGPGEPVLAAEVPADGGA 294
           VD++GL    PG+P+     PADG A
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 372 QNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVY 482
           Q+V+FL + +  +  V YE ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +2

Query: 86  YHYKLKMPKVVYHYFACKALGESGRMLLAYGGQDFEDHRVLSADWPDFKPKTPLRSDASI 265
           YH  L++ K + H +  +A      +L  Y   DF    V  AD   F P +   SD S+
Sbjct: 499 YHIPLRLAKHLSHNYGSRA----PLILELYSKTDFNKLPVTLADKEVFAPSSDASSDKSV 554

Query: 266 S 268
           S
Sbjct: 555 S 555


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -1

Query: 277 PSITNTGI*PKRSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLASEVM 122
           PS  +T     R L    R ++   +V  EV ASV EQ T +LP    S  M
Sbjct: 765 PSTHSTLPATSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFM 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,178
Number of Sequences: 5004
Number of extensions: 43444
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)