Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N10
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0932 - 32841331-32842242                                         34   0.18 
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443     30   2.9  
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    29   3.8  
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588...    29   6.6  
02_05_1323 + 35700147-35701649                                         29   6.6  
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530...    29   6.6  
09_04_0448 + 17692650-17692970,17693461-17693811                       28   8.7  

>02_05_0932 - 32841331-32842242
          Length = 303

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
 Frame = +3

Query: 153 AAVCCSPTEART---SKTTACSPL-TG--LTSSQR-LRFGQMPVLVIDGKQYAQSTAICR 311
           A     P  AR+   S+ +   P  TG  LT ++R +RF  + V+V DG+   +   + R
Sbjct: 163 AVTAAEPASARSILSSRASRRQPAATGGILTPARRAVRFSPVAVVVDDGEHGCRDAGVAR 222

Query: 312 YLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVYPAY 491
             G +  +A A  E A E ++ VE L  +RA   A   E  +E      + F     PA+
Sbjct: 223 LRGAEREVAAA-QESAAEAERRVEEL--LRALGVAEESERAKESSESSSDLFELESLPAF 279


>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
          Length = 221

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 246 FGQMPVLVIDGKQYAQSTAICRYLGRKYGLAGAN 347
           FGQ+PVL    +   +S AI RY+  KY   GA+
Sbjct: 56  FGQIPVLQDGDEVLYESRAINRYIATKYKAEGAD 89


>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 7   FIPFTIGNSLRFCSFCFS 60
           FIPF++G  + FC+ CFS
Sbjct: 258 FIPFSLGRIILFCTSCFS 275


>06_01_0786 -
           5881178-5881303,5881523-5881627,5882078-5882169,
           5882267-5882336,5882639-5882724,5882916-5883017,
           5883375-5883597,5883693-5883758,5883896-5883986,
           5884019-5884057,5885401-5885548,5885623-5885715,
           5885782-5885886,5886645-5886826,5886912-5887084
          Length = 566

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 244 RSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLA 134
           R LW+E RP  G  AV+ +  A  G       PE  A
Sbjct: 46  RLLWVETRPEEGGRAVLVKEAAEPGGDAVDVTPEGFA 82


>02_05_1323 + 35700147-35701649
          Length = 500

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 72  SARRLTTIN*KCLRLCTITSLARLSGRAA 158
           SARR+  +N  C  +C+ TSL    GRAA
Sbjct: 140 SARRVFDVNVSCRDVCSWTSLLTAYGRAA 168


>01_04_0021 -
           15151645-15151809,15152184-15152343,15152548-15153025,
           15153243-15153291,15153585-15153734
          Length = 333

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 246 FGQMPVLVIDGKQYAQSTAICRYLGRKY 329
           FG++PVL        QS AI RY+ RKY
Sbjct: 52  FGEIPVLEDGDLTLYQSRAIARYIFRKY 79


>09_04_0448 + 17692650-17692970,17693461-17693811
          Length = 223

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 252 QMPVLVIDGKQYAQSTAICRYL 317
           ++PVLV DGK  A+ST I  Y+
Sbjct: 55  KVPVLVHDGKPLAESTVIVEYI 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,376,420
Number of Sequences: 37544
Number of extensions: 306015
Number of successful extensions: 858
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)