Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_N09
(959 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 46 1e-05
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.015
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.045
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.24
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.32
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.56
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 1.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 6.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 45.6 bits (103), Expect = 1e-05
Identities = 23/72 (31%), Positives = 23/72 (31%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXPPXPRXGGGXXXXXPPXQXXXXXXGGXX 778
PPPPP P P P PP P P PP P G PP GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 779 XXXPXPPXPXXP 814
P P P
Sbjct: 792 YYAPAPQAEPEP 803
Score = 31.9 bits (69), Expect = 0.14
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = +2
Query: 632 APXPXXPXXXPPPPXAXPXPXPPXPRXGGGXXXXXPPXQXXXXXXGGXXXXXPXPPXPXX 811
+P P P P P P P PP GG PP G P PP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP--------GVAGAGPPPPPPPP 782
Query: 812 P 814
P
Sbjct: 783 P 783
Score = 31.1 bits (67), Expect = 0.24
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = +2
Query: 623 KXPAPXPXXPXXXPPPPXAXPXPXPPXPRXGGGXXXXXPPXQXXXXXXGGXXXXXPXPPX 802
K P P P P P P P PP P GG PP G P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVP-PPAPIMGG------PPPPPPPPGVAGAGPPPPPPPP 782
Query: 803 P 805
P
Sbjct: 783 P 783
Score = 30.3 bits (65), Expect = 0.42
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 478 GAPPPPXXFFFXXGGGXPPPPP 413
G PPPP G G PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = -2
Query: 478 GAPPPPXXFFFXXGGGXPPPPPXXFXXPXXXXXXGPPPR 362
G PPPP G PPPPP P P+
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -2
Query: 469 PPPXXFFFXXGGGXPPPPPXXFXXPXXXXXXGPPP 365
PPP GG PPPPP PPP
Sbjct: 752 PPPAPIM---GGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.015
Identities = 28/121 (23%), Positives = 30/121 (24%), Gaps = 2/121 (1%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXPPXPRXGGGXXXXXPPXQXXXXXXG--G 772
PPPPP P PP P PP PR PP
Sbjct: 338 PPPPPPRSNAAGSIPL-------PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPA 390
Query: 773 XXXXXPXPPXPXXPXXXXXAAXXXPXXXTXKXXXPLSPPXXXXXXTXXTTXPPPXAPXAP 952
P P P + P T P +PP P AP P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Query: 953 P 955
P
Sbjct: 451 P 451
Score = 34.7 bits (76), Expect = 0.020
Identities = 32/127 (25%), Positives = 34/127 (26%), Gaps = 9/127 (7%)
Frame = +2
Query: 602 PPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXPPXPRXGGGXXXXXPPXQXXXXXXG--GX 775
PPPP P P P PP P PP PR PP
Sbjct: 337 PPPP-----PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
Query: 776 XXXXPXPPXPXXPXXXXXAAXXXPXXXTXKXXXPLSPPXXXXXXTXX------TTXP-PP 934
P P P + P T P +PP P PP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 935 XAPXAPP 955
AP APP
Sbjct: 452 SAPIAPP 458
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXPP 700
P PP PA P P PPP P P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXP 697
PP P PA P P P P P P P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/55 (25%), Positives = 14/55 (25%)
Frame = +1
Query: 652 PXXPXPPRXXPXSSPPXXXXXGXXXXXXXXXPXXXXXXGGXXXPXXXPXPPPPPP 816
P P PP PP P G P PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXPPXP 706
PP PP P P P PP A P P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.045
Identities = 26/117 (22%), Positives = 34/117 (29%), Gaps = 2/117 (1%)
Frame = +2
Query: 608 PPXXXKXPAPXPXXPXXXPPPPXAXPXPXPPXPRXGGGXXXXXPPXQXXXXXXGGXXXXX 787
PP AP P PP A PP P+ G PP +
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS-VGVP 1208
Query: 788 PXPPXPXXPXXXXXAAXXXPXXXTXKXXXPLSPP--XXXXXXTXXTTXPPPXAPXAP 952
P PP P +A P P+ P T ++ P P + +P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASP 1265
Score = 31.1 bits (67), Expect = 0.24
Identities = 20/75 (26%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Frame = +2
Query: 599 PPPPPXXXKXP------APXPXXPXXXPPPPXAXPXPXPPXPRXGGGXXXXXPPXQXXXX 760
PP P K P A P P PP P PP P+ G PP
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Query: 761 XXGGXXXXXPXPPXP 805
PP P
Sbjct: 1072 EIPSIPAPSGAPPVP 1086
Score = 29.9 bits (64), Expect = 0.56
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXP-XXPXXXPPPPXAXPXPXP 697
PP PP P P P PPP A P P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 28.7 bits (61), Expect = 1.3
Identities = 29/127 (22%), Positives = 33/127 (25%), Gaps = 8/127 (6%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXP-XXXPPPPXAXPXP-----XPPXPRXGGGXXXXXPPXQXXXX 760
P P P P P P P P A P P PP P G P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV 1152
Query: 761 XXGGXXXXXPXPPXPXXPXXXXXAAXXXPXXXTXKXXXPLSPPXXXXXXTXXTTXPPPXA 940
P P P ++ P P+ PP + PP
Sbjct: 1153 PAPSGAPPVPKPSV-AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Query: 941 P--XAPP 955
P APP
Sbjct: 1212 PPSTAPP 1218
Score = 27.1 bits (57), Expect = 3.9
Identities = 26/122 (21%), Positives = 26/122 (21%), Gaps = 4/122 (3%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXPPXPRXGGGXXXXXPPXQXXXXXXGGXX 778
PP P P P P P P PP P G P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVA---VPPVPAPSGAPPVPKPSVAAPPVPVPSGA 1139
Query: 779 XXXPXPPXPXXPXXXXXAAXXXPXXXTXKXXXPLS----PPXXXXXXTXXTTXPPPXAPX 946
P P P A P P PP PP AP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 947 AP 952
P
Sbjct: 1200 VP 1201
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXP 697
PP PP P P P P P A P P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 26.2 bits (55), Expect = 6.9
Identities = 23/117 (19%), Positives = 26/117 (22%), Gaps = 5/117 (4%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXP-----PPPXAXPXPXPPXPRXGGGXXXXXPPXQXXXXX 763
P P P P P P P PP P PP P+ P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181
Query: 764 XGGXXXXXPXPPXPXXPXXXXXAAXXXPXXXTXKXXXPLSPPXXXXXXTXXTTXPPP 934
P PP P + P +P T PP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/37 (29%), Positives = 13/37 (35%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXPPXPR 709
P PP + P P PP P PP P+
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.24
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +2
Query: 608 PPXXXKXPAPXPXXPXXXPPPPXAXPXPXPPXPRXGGGXXXXXPP 742
PP + AP PPPP + P P P G PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 30.7 bits (66), Expect = 0.32
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXP 697
P PPP P P P P PP A P P P
Sbjct: 1705 PTPPPPPMSVPPP-PSAPPMPAGPPSAPPPPLP 1736
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +1
Query: 598 SPPPPPXXKXPXXPPXXXPXXPX--PPRXXPXSSPPXXXXXG 717
+PPPPP P P P PP P SS P G
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.32
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXPP 700
PP P PA P P PP P + P P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 30.3 bits (65), Expect = 0.42
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 598 SPPPPPXXKXPXXPPXXXPXXPXPPRXXPXSSPP 699
S P PP + PP P P P P S+PP
Sbjct: 126 SAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP 159
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Frame = +2
Query: 599 PPP--PPXXXKXPAPXPXXPXXXPP-PPXAXPXPXPPXP 706
PPP P K P P P PP PP P P P
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 602 PPPPXXXKXPAPXPXXPXXXPPPPXAXPXPXPPXP 706
PP P PA P P PP + P PP P
Sbjct: 165 PPIPSSLPPPAQ-PAAPVKSPPSAPSLPSAVPPMP 198
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = +2
Query: 788 PXPPXPXXPXXXXXAAXXXPXXXTXKXXXPLS-PPXXXXXXTXXTTXPPPXAPXAP 952
P P P P P + P S PP ++ PPP P AP
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.56
Identities = 23/80 (28%), Positives = 23/80 (28%)
Frame = -3
Query: 708 RGXGGXGXGXAXGGGGXXXGXXGXGAGXFXXXGGGGGXKXXXXXXXXXXXXXXXGXXXXX 529
RG G G G GG G G G F GG GG
Sbjct: 183 RGHNGGGFGGFGGGSGGPP----PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238
Query: 528 LXXGXPGGXGXXXXXXGGXP 469
G PGG G GG P
Sbjct: 239 GFGGGPGGFGGGLGGFGGGP 258
Score = 29.9 bits (64), Expect = 0.56
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = -1
Query: 815 GGGGGGXGXXXGXXXP-PXXXXXXGXXXXXXXXXPXXXXXGGEEXGXXRGGXGXXGXXXG 639
GGG GG G G P P G GG G GG G G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF-EGGPGGFGGGPG 245
Query: 638 GXXGFXXXGGGG 603
G G GGG
Sbjct: 246 GFGGGLGGFGGG 257
Score = 29.9 bits (64), Expect = 0.56
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = -3
Query: 738 GXXXXXPPPXRGXGGXGXGXAXGGGGXXXGXXGXGAGXFXXXGGGGG 598
G PPP G G G G G G G G G G GG GG
Sbjct: 194 GGGSGGPPPGPGGFG-GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
Score = 27.1 bits (57), Expect = 3.9
Identities = 28/81 (34%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Frame = -2
Query: 448 FXXGGGXPPPPPXXFXXPXXXXXXGPPPRGGGXX*KKXGGGXXKKXXXGQKKXFXGG-GG 272
F G G PPP P F G G G GGG G F GG GG
Sbjct: 193 FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG----FGGGPG--GFEGGPGGFGGGPGG 246
Query: 271 XKKGXGXF-XPPGFLI*GPXG 212
G G F PG GP G
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGG 267
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect(2) = 1.0
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPPXAXPXP 691
PPP AP P PPP P P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 22.6 bits (46), Expect(2) = 1.0
Identities = 13/56 (23%), Positives = 15/56 (26%)
Frame = +2
Query: 788 PXPPXPXXPXXXXXAAXXXPXXXTXKXXXPLSPPXXXXXXTXXTTXPPPXAPXAPP 955
P PP P A + + P PP PPP P P
Sbjct: 192 PPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLP 247
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -3
Query: 708 RGXGGXGXGXAXGGG-GXXXGXXGXGAGXFXXXGGGGGXK 592
RG G G G A GGG G G G G GG G +
Sbjct: 25 RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -3
Query: 699 GGXGXGXAXGGGGXXXGXXGXGAGXFXXXGGGGG 598
GG G G G GG G G G G GGG G
Sbjct: 9 GGRG-GSRGGRGGFNGGRGGFGGGRGGARGGGRG 41
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 601 PPPPPXXKXPXXPPXXXPXXPXPPRXXP 684
PPPPP PP P PP P
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPP 1910
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 641 PXXPXXXPPPPXAXPXPXPPXPRXGG 718
P P PPPP P PP P G
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 601 PPPPPXXKXPXXPPXXXP 654
PPPPP + P PP P
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 439 GGGXPPPPPXXFXXPXXXXXXGPPPRG 359
G PPPPP F P PPP G
Sbjct: 7 GNPPPPPPPPGFEPPSQPPP--PPPPG 31
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 598 SPPPPPXXKXPXXPPXXXPXXPXPP 672
+PPPPP P P P P PP
Sbjct: 8 NPPPPPPP--PGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 599 PPPPPXXXKXPAPXPXXPXXXPPPP 673
PPPPP P P P PPPP
Sbjct: 9 PPPPP-----PPPGFEPPSQPPPPP 28
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -2
Query: 472 PPPPXXFFFXXGGGXPPPPPXXF 404
PPPP F PPPPP +
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGY 32
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -3
Query: 714 PXRGXGGXGXGXAXGGGGXXXGXXGXGAGXFXXXGG 607
P G G G GG G G G G G GG
Sbjct: 443 PRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGG 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,193
Number of Sequences: 5004
Number of extensions: 39576
Number of successful extensions: 424
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -