Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N08
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           33   0.38 
02_04_0452 + 23044190-23045227                                         29   4.7  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
 Frame = -3

Query: 388 QPTVGNGYEPXDNRPXXVNPPXXYXPXGNGXEPIDXG--AYXVXRPQGRPXXKPTP 227
           QP     Y P  + P  V PP  Y P  +G  P   G        P GRP   P P
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMYEPPVGRPNSGPPP 442


>02_04_0452 + 23044190-23045227
          Length = 345

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 767 PGGRGGEGFPWINXPAQ 817
           PGG GG  +PW+N P Q
Sbjct: 123 PGGGGGGCWPWVNIPPQ 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,851
Number of Sequences: 37544
Number of extensions: 253830
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)