Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N08
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    28   7.4  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    28   7.4  
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    28   9.7  
AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen pro...    28   9.7  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
 Frame = -3

Query: 406 PDP-FFAQPTVGNGYEPXDNRPXXVNPPXXYXPXGNGXEPIDXGAYXVXRPQ-GRPXXKP 233
           P P FF  P V NG+ P    P  + PP      G    P   G      P  G P   P
Sbjct: 59  PKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118

Query: 232 TP 227
            P
Sbjct: 119 PP 120


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 843 GKPPFSRGGWAGSLIQGKPSPPLPP 769
           G PP   GG  G    G P+PP PP
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPP 649


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 843 GKPPFSRGGWAGSLIQGKPSPPLPP 769
           G PP   GG  G    G P+PP PP
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPP 649


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -3

Query: 427 ESVVIXDPDPFFAQPTVGNGYEPXDNRPXXVNPPXXYXPXGNGXEPIDXG 278
           +SV+   P     QP VGN Y+P    P   +PP  Y     G  P   G
Sbjct: 81  QSVLFEQPQ---IQPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPG 123


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -3

Query: 427 ESVVIXDPDPFFAQPTVGNGYEPXDNRPXXVNPPXXYXPXGNGXEPIDXG 278
           +SV+   P     QP VGN Y+P    P   +PP  Y     G  P   G
Sbjct: 52  QSVLFEQPQ---IQPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPG 94


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -3

Query: 427 ESVVIXDPDPFFAQPTVGNGYEPXDNRPXXVNPPXXYXPXGNGXEPIDXG 278
           +SV+   P     QP VGN Y+P    P   +PP  Y     G  P   G
Sbjct: 81  QSVLFEQPQ---IQPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPG 123


>AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen
           protein 99 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 855 GXXKGKPPFSRGGWAGSLIQGKPSPPLPPG 766
           G   G  P S     G+++ G P PP PPG
Sbjct: 158 GPHAGPGPMSHHTNMGNVLPGPPGPPGPPG 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,693
Number of Sequences: 27780
Number of extensions: 186821
Number of successful extensions: 611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)